SRR2936477.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936477.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	276496
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCCGTCTTCTGC	1954	0.7067010010994734	No Hit
CCTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCCGTCTTCTGC	1947	0.704169318905156	No Hit
CTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCCGTCTTCTGCT	1110	0.40145246224176845	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	734	0.26546496151843063	No Hit
TCTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCCGTCTTCTGC	718	0.2596782593599907	No Hit
ACTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCCGTCTTCTGC	562	0.20325791331520168	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCC	399	0.14430588507609513	No Hit
ATGAATGATACCTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGC	385	0.1392425206874602	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	318	0.11501070539899311	No Hit
GCCTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCCGTCTTCTG	308	0.11139401654996818	No Hit
AGCTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCCGTCTTCTG	305	0.11030900989526068	No Hit
ACCTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCCGTCTTCTG	280	0.10126728777269833	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTTCGAG	20	7.023982E-4	45.000004	1
TTAGGCG	20	7.023982E-4	45.000004	1
CCGGGTT	20	7.023982E-4	45.000004	6
GTACCCC	20	7.023982E-4	45.000004	33
ACCGGGC	25	3.883095E-5	45.000004	4
TCCGCAG	30	2.1595006E-6	45.000004	1
CAAGTCG	25	3.883095E-5	45.000004	1
GTCTGCG	20	7.023982E-4	45.000004	1
CGTGAGG	30	2.1595006E-6	45.000004	2
CGGCAGG	30	2.1595006E-6	45.000004	2
GGCCGGA	20	7.023982E-4	45.000004	27
CAACCTA	20	7.023982E-4	45.000004	37
TAAACGG	40	6.7830115E-9	45.000004	2
TCGGGCG	20	7.023982E-4	45.000004	5
GTCTATC	20	7.023982E-4	45.000004	43
GTTAGCT	20	7.023982E-4	45.000004	17
AGGAATA	20	7.023982E-4	45.000004	29
TAACGGG	30	2.1595006E-6	45.000004	3
TACGGAT	20	7.023982E-4	45.000004	4
GGCCCGA	20	7.023982E-4	45.000004	11