SRR2936476.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936476.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	538876
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCTGCCTTGTTCGTATGCCGTCTTCTGC	3748	0.6955217897995086	No Hit
CCTGTCTCTTATACACATCTGACGCTGCCTTGTTCGTATGCCGTCTTCTGC	3238	0.6008803509527239	No Hit
CTGTCTCTTATACACATCTGACGCTGCCTTGTTCGTATGCCGTCTTCTGCT	2467	0.4578047639902315	Illumina Single End Adapter 1 (95% over 21bp)
TCTGTCTCTTATACACATCTGACGCTGCCTTGTTCGTATGCCGTCTTCTGC	1561	0.28967703145064916	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGCCTTGTTCGTATGC	1540	0.28578003102754623	No Hit
GAATCTGTCTCTTATACACATCTGACGCTGCCTTGTTCGTATGCCGTCTTC	1413	0.2622124570402096	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTGCCTTGTTCGTATGCCG	1406	0.26091345689917533	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1135	0.21062359429627597	No Hit
ACTGTCTCTTATACACATCTGACGCTGCCTTGTTCGTATGCCGTCTTCTGC	1075	0.19948930737312479	No Hit
ACCTGTCTCTTATACACATCTGACGCTGCCTTGTTCGTATGCCGTCTTCTG	676	0.12544629933416965	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTGCCTTGTTCGTATGCC	618	0.11468315530845687	No Hit
CGCTGTCTCTTATACACATCTGACGCTGCCTTGTTCGTATGCCGTCTTCTG	583	0.10818815460328535	No Hit
GCCTGTCTCTTATACACATCTGACGCTGCCTTGTTCGTATGCCGTCTTCTG	573	0.1063324401160935	No Hit
AGCTGTCTCTTATACACATCTGACGCTGCCTTGTTCGTATGCCGTCTTCTG	550	0.10206429679555222	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACGTCC	30	2.1633477E-6	45.000004	21
AGATCGT	25	3.888037E-5	45.000004	23
TAGACGG	60	0.0	45.000004	2
TTGTCGC	30	2.1633477E-6	45.000004	38
AGGCGAT	25	3.888037E-5	45.000004	6
CGTTCCA	25	3.888037E-5	45.000004	14
CGTTAGG	55	1.8189894E-12	45.000004	2
CTACGAA	30	2.1633477E-6	45.000004	11
TGCGACG	25	3.888037E-5	45.000004	1
ATAAGCG	25	3.888037E-5	45.000004	1
CGAATAT	30	2.1633477E-6	45.000004	14
GATTCGA	25	3.888037E-5	45.000004	22
CCACGAC	30	2.1633477E-6	45.000004	11
CGATAGT	25	3.888037E-5	45.000004	10
GCGTAAG	60	0.0	45.000004	1
AATCGCG	30	2.1633477E-6	45.000004	1
GACTACG	25	3.888037E-5	45.000004	1
TGTCCGA	25	3.888037E-5	45.000004	4
CGTATGG	45	3.8380676E-10	45.0	2
CGAGTAT	20	7.029949E-4	45.0	43