##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2936474.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 622624 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.01128449915198 33.0 31.0 34.0 30.0 34.0 2 32.01254047386545 33.0 31.0 34.0 30.0 34.0 3 32.06420568432955 33.0 31.0 34.0 30.0 34.0 4 35.73831076219356 37.0 35.0 37.0 33.0 37.0 5 34.82753957444621 37.0 35.0 37.0 33.0 37.0 6 35.315630300149046 37.0 35.0 37.0 33.0 37.0 7 35.874050791488926 37.0 35.0 37.0 35.0 37.0 8 35.85383955645783 37.0 35.0 37.0 35.0 37.0 9 37.69079251683199 39.0 37.0 39.0 35.0 39.0 10 37.37600542221308 39.0 37.0 39.0 34.0 39.0 11 37.29124319011153 39.0 37.0 39.0 34.0 39.0 12 37.13814758184715 39.0 37.0 39.0 34.0 39.0 13 36.99542581076219 39.0 37.0 39.0 33.0 39.0 14 37.96537235956211 40.0 37.0 41.0 33.0 41.0 15 38.15635118466362 40.0 37.0 41.0 33.0 41.0 16 38.19883910674822 40.0 37.0 41.0 34.0 41.0 17 38.213801588117384 40.0 37.0 41.0 34.0 41.0 18 38.207976242483426 40.0 37.0 41.0 34.0 41.0 19 38.154648712545615 40.0 37.0 41.0 34.0 41.0 20 38.1535372873516 40.0 37.0 41.0 34.0 41.0 21 38.052371897003646 40.0 36.0 41.0 34.0 41.0 22 38.09898751092152 40.0 36.0 41.0 34.0 41.0 23 38.10194113943568 40.0 36.0 41.0 34.0 41.0 24 38.059154481677545 40.0 36.0 41.0 34.0 41.0 25 37.884822942899724 40.0 36.0 41.0 34.0 41.0 26 37.895530850079666 40.0 36.0 41.0 34.0 41.0 27 37.90753167240582 40.0 36.0 41.0 34.0 41.0 28 37.80674371691422 40.0 36.0 41.0 34.0 41.0 29 37.780565798941254 40.0 36.0 41.0 33.0 41.0 30 37.68272504754073 40.0 36.0 41.0 33.0 41.0 31 37.634045587706225 40.0 36.0 41.0 33.0 41.0 32 37.608571144061266 40.0 36.0 41.0 33.0 41.0 33 37.48956191858971 40.0 35.0 41.0 33.0 41.0 34 37.4254333273372 40.0 35.0 41.0 33.0 41.0 35 37.370645847252916 40.0 35.0 41.0 33.0 41.0 36 37.29810286786247 40.0 35.0 41.0 33.0 41.0 37 37.26676935036234 40.0 35.0 41.0 33.0 41.0 38 37.21350606465539 40.0 35.0 41.0 32.0 41.0 39 37.16660617001593 39.0 35.0 41.0 32.0 41.0 40 37.0536856915249 39.0 35.0 41.0 32.0 41.0 41 36.96410353600247 39.0 35.0 41.0 32.0 41.0 42 36.961280002055815 39.0 35.0 41.0 32.0 41.0 43 36.84703448630313 39.0 35.0 41.0 31.0 41.0 44 36.711262334892325 39.0 35.0 41.0 31.0 41.0 45 36.71003366397697 39.0 35.0 41.0 31.0 41.0 46 36.59047675643727 39.0 35.0 41.0 31.0 41.0 47 36.495984735570744 39.0 35.0 41.0 31.0 41.0 48 36.4656229120625 39.0 35.0 41.0 31.0 41.0 49 36.44961806804749 39.0 35.0 41.0 31.0 41.0 50 36.33018483065221 39.0 35.0 40.0 31.0 41.0 51 35.091739155573826 37.0 34.0 40.0 27.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 3.0 9 13.0 10 12.0 11 13.0 12 17.0 13 13.0 14 9.0 15 21.0 16 38.0 17 70.0 18 120.0 19 209.0 20 387.0 21 636.0 22 1073.0 23 1555.0 24 2259.0 25 3097.0 26 4074.0 27 4857.0 28 5745.0 29 6975.0 30 8872.0 31 11435.0 32 15267.0 33 22212.0 34 41459.0 35 54343.0 36 44946.0 37 67181.0 38 119953.0 39 205619.0 40 140.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.96160122321015 21.376625379040963 24.906685254664133 11.75508814308475 2 31.184631495091743 24.67861823508249 26.071433160302206 18.065317109523566 3 31.84297425091227 23.624209795960322 27.810363879323635 16.722452073803773 4 27.79285732641209 25.830838515701288 26.796268695071184 19.58003546281544 5 24.450229994346508 31.284370663514416 25.45211877473403 18.813280567405048 6 25.384019890013874 32.99680063730277 26.299018348152337 15.320161124531017 7 76.5323855167806 6.600612889962481 10.859041733052372 6.007959860204553 8 76.50797270905073 6.222535591303901 10.436635915094824 6.832855784550547 9 70.67829058950507 7.897543300611605 13.314938068561444 8.10922804132189 10 40.338791951482754 23.76458344040705 20.199189237806443 15.697435370303747 11 29.78507092563088 25.322506038957705 25.411002466978466 19.481420568432956 12 27.35406922958318 21.899091586575526 31.428598961813233 19.318240222028063 13 24.729531788045435 25.047701341419543 31.58551549570848 18.63725137482654 14 19.496999794418464 28.999203371537234 30.507497301742305 20.996299532301997 15 17.354775916122733 25.438627486251736 37.240132086138665 19.966464511486866 16 20.08403145397543 25.45950686128386 32.37106182864778 22.08539985609292 17 20.69595775299378 25.375507529423857 28.229718096314947 25.69881662126741 18 22.24392249575988 24.588033869558515 31.7711813229172 21.3968623117644 19 22.83111476589402 26.625700262116464 27.99169322094876 22.551491751040757 20 22.978234054581897 27.575069383769335 28.345357711877472 21.101338849771288 21 22.703911188775248 27.111707868633395 29.958369738397494 20.226011204193863 22 21.064559027599323 25.438627486251736 28.901712751194943 24.595100734954002 23 19.603163385927942 26.552461838926867 29.74957598807627 24.09479878706892 24 22.448540371074678 23.718327594182043 30.427834455465902 23.40529757927738 25 19.733257953435782 26.944512257799246 28.62321401038187 24.699015778383103 26 18.64753045176543 28.65613917870175 28.409601942745542 24.286728426787274 27 19.7632921313666 26.760773757516574 29.123837179421287 24.352096931695534 28 16.88258081924243 26.723833324767437 30.25052037827003 26.1430654777201 29 18.496395898648302 26.224976872076887 29.554594747391683 25.724032481883125 30 20.276282314848125 25.19032353394665 29.648391324459062 24.88500282674616 31 20.489251940175773 26.58635067070977 25.890746260985765 27.033651128128692 32 21.077247263195765 27.07814025800483 25.91258929948091 25.9320231793185 33 20.43994449298453 25.29054453410084 27.763786811944286 26.505724160970345 34 17.79677622449504 25.357358534203627 28.909261448321942 27.93660379297939 35 17.24829110345891 26.111585804594746 29.633936372513748 27.006186719432595 36 20.678451200082232 26.023410597728326 28.55431207277587 24.74382612941358 37 18.172604975073238 25.957560261088553 29.463367939559028 26.40646682427918 38 18.256764917510406 26.48179318497199 28.53295086601223 26.72849103150537 39 19.52382176080588 24.880023898853885 29.67119802641723 25.92495631392301 40 21.004008840006165 23.282591098319372 31.066582720871665 24.646817340802794 41 17.960920234362952 25.29439918795292 28.434978413938428 28.309702163745698 42 19.511133525209438 25.390604923677856 29.34226756437272 25.755993986739988 43 20.76084442617053 24.37924011923729 28.769690856761066 26.090224597831114 44 19.909608367168627 24.298131777766358 28.16226165390348 27.629998201161538 45 19.25769003443491 23.50150331500231 27.87942642750681 29.36138022305597 46 21.332296859741994 24.22730251323431 29.315927429716808 25.12447319730688 47 17.449696767230304 23.8644832194069 32.248997789998455 26.43682222336434 48 18.63628771136352 23.79526006064655 30.193343012797452 27.375109215192477 49 19.889532045022356 21.75181168731048 32.628520583851575 25.73013568381559 50 19.375417587500642 21.69431310068356 31.49364624556715 27.43662306624865 51 18.377704682119543 22.37642622192527 28.642647890219457 30.603221205735725 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 282.0 1 468.0 2 654.0 3 1342.5 4 2031.0 5 1427.0 6 823.0 7 828.5 8 834.0 9 924.0 10 1014.0 11 1044.0 12 1074.0 13 1116.0 14 1158.0 15 1158.0 16 1158.0 17 1088.0 18 1018.0 19 1418.5 20 1819.0 21 1844.0 22 1869.0 23 2239.0 24 2609.0 25 3185.0 26 4403.5 27 5046.0 28 6043.5 29 7041.0 30 8479.0 31 9917.0 32 11353.5 33 12790.0 34 14645.5 35 16501.0 36 17860.5 37 19220.0 38 21164.0 39 23108.0 40 25443.0 41 27778.0 42 32715.5 43 37653.0 44 41668.0 45 45683.0 46 53684.0 47 61685.0 48 68172.5 49 74660.0 50 72640.0 51 70620.0 52 58592.0 53 46564.0 54 40134.0 55 33704.0 56 30198.0 57 26692.0 58 25011.0 59 23330.0 60 21127.5 61 18925.0 62 16007.0 63 13089.0 64 11296.0 65 9503.0 66 8551.0 67 7599.0 68 6231.5 69 4864.0 70 3699.0 71 2534.0 72 2184.5 73 1835.0 74 1463.0 75 838.5 76 586.0 77 403.5 78 221.0 79 202.0 80 183.0 81 125.5 82 68.0 83 41.5 84 15.0 85 11.0 86 7.0 87 5.0 88 3.0 89 2.0 90 1.0 91 1.5 92 2.0 93 1.5 94 1.0 95 0.5 96 0.0 97 0.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 622624.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 31.329054649155914 #Duplication Level Percentage of deduplicated Percentage of total 1 71.40244913572512 22.369712310567074 2 12.006840101201774 7.523258993884541 3 4.692111034117518 4.409982090233256 4 2.2612571101185166 2.833721903147815 5 1.3546544446660695 2.122002156383262 6 0.9469776645268354 1.7800749002094756 7 0.6333639024216987 1.3889884618240436 8 0.5005159605907962 1.2544553505699054 9 0.3977609279717338 1.1215326464752875 >10 5.275110172655295 40.700628015984016 >50 0.4686395977760868 8.933752138434812 >100 0.053617731758719755 2.936084076808641 >500 0.004124440904516904 0.9524748487699722 >1k 0.002577775565323065 1.6733321067079723 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GCTGTCTCTTATACACATCTGACGCACCCTCTATCGTATGCCGTCTTCTGC 3521 0.565509842216169 TruSeq Adapter, Index 16 (95% over 21bp) CCTGTCTCTTATACACATCTGACGCACCCTCTATCGTATGCCGTCTTCTGC 2645 0.4248149766151 TruSeq Adapter, Index 16 (95% over 21bp) CTGTCTCTTATACACATCTGACGCACCCTCTATCGTATGCCGTCTTCTGCT 1938 0.31126329855578966 TruSeq Adapter, Index 13 (95% over 22bp) TCTGTCTCTTATACACATCTGACGCACCCTCTATCGTATGCCGTCTTCTGC 1242 0.1994783368453513 TruSeq Adapter, Index 16 (95% over 21bp) CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1014 0.1628591252505525 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCACCCTCTATCGTATGC 946 0.15193760600298092 No Hit GAATCTGTCTCTTATACACATCTGACGCACCCTCTATCGTATGCCGTCTTC 942 0.15129516369430024 No Hit ACTGTCTCTTATACACATCTGACGCACCCTCTATCGTATGCCGTCTTCTGC 939 0.15081333196278973 TruSeq Adapter, Index 13 (95% over 21bp) GAATGATACCTGTCTCTTATACACATCTGACGCACCCTCTATCGTATGCCG 848 0.13619776944030426 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 6.424423086806804E-4 0.0 0.0 0.3286092408901681 0.0 2 6.424423086806804E-4 0.0 0.0 1.7463188055712597 0.0 3 8.030528858508506E-4 0.0 0.0 2.396470421956108 0.0 4 8.030528858508506E-4 0.0 0.0 3.1966323174178957 0.0 5 8.030528858508506E-4 0.0 0.0 5.265617772524028 0.0 6 9.636634630210207E-4 0.0 0.0 6.340263144369636 0.0 7 9.636634630210207E-4 0.0 0.0 7.474976872076888 0.0 8 9.636634630210207E-4 0.0 0.0 9.219368350722105 0.0 9 9.636634630210207E-4 0.0 0.0 9.887508351750013 0.0 10 9.636634630210207E-4 0.0 0.0 11.413790666598139 0.0 11 9.636634630210207E-4 0.0 0.0 13.353002775350774 0.0 12 9.636634630210207E-4 0.0 0.0 14.96392686436758 0.0 13 9.636634630210207E-4 0.0 0.0 15.603638793236367 0.0 14 9.636634630210207E-4 0.0 0.0 15.894183327337204 0.0 15 9.636634630210207E-4 0.0 0.0 16.400909698309093 0.0 16 9.636634630210207E-4 0.0 0.0 17.379831166161278 0.0 17 9.636634630210207E-4 0.0 0.0 18.51502672560004 0.0 18 9.636634630210207E-4 0.0 0.0 19.824002929536928 0.0 19 0.0011242740401911908 0.0 0.0 20.556868993164414 0.0 20 0.0011242740401911908 0.0 0.0 21.284916739476795 0.0 21 0.0011242740401911908 0.0 0.0 22.171165904301795 0.0 22 0.0011242740401911908 0.0 0.0 23.070585136454746 0.0 23 0.0011242740401911908 0.0 0.0 23.939167137791028 0.0 24 0.0011242740401911908 0.0 0.0 24.624653081153312 0.0 25 0.0011242740401911908 0.0 0.0 25.24653723595621 0.0 26 0.0011242740401911908 0.0 0.0 25.84946934265303 0.0 27 0.0011242740401911908 0.0 0.0 26.4623593051344 0.0 28 0.0012848846173613608 0.0 0.0 27.06770057048877 0.0 29 0.0012848846173613608 0.0 0.0 27.683320912782033 0.0 30 0.0012848846173613608 0.0 0.0 28.382779976358123 0.0 31 0.0012848846173613608 0.0 0.0 28.99117284267873 0.0 32 0.0012848846173613608 0.0 0.0 29.565998098370766 0.0 33 0.0012848846173613608 0.0 0.0 30.198482551266896 0.0 34 0.0012848846173613608 0.0 0.0 30.792420465642184 0.0 35 0.0012848846173613608 0.0 0.0 31.45750886570386 0.0 36 0.0012848846173613608 0.0 0.0 32.02012771753097 0.0 37 0.0012848846173613608 0.0 0.0 32.583228401089585 0.0 38 0.0012848846173613608 0.0 0.0 33.14745335868839 0.0 39 0.0012848846173613608 0.0 0.0 33.872288893457366 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTTAGCG 50 2.1827873E-11 45.000004 1 CGGGTCA 55 1.8189894E-12 45.000004 6 GTACACG 50 2.1827873E-11 45.000004 1 GTACTAG 50 2.1827873E-11 45.000004 1 TCGTTGA 20 7.030793E-4 45.0 24 CCCCATA 20 7.030793E-4 45.0 31 CTCGACG 20 7.030793E-4 45.0 1 GCGCTAA 20 7.030793E-4 45.0 9 GCGTAAG 20 7.030793E-4 45.0 1 CCCGCGT 20 7.030793E-4 45.0 20 TGCCGAT 20 7.030793E-4 45.0 11 GCTCACG 20 7.030793E-4 45.0 44 ACGTTGT 30 2.1638934E-6 44.999996 20 CGGTCTA 30 2.1638934E-6 44.999996 31 TATCGCG 30 2.1638934E-6 44.999996 1 AGTCGTT 30 2.1638934E-6 44.999996 23 CTCGCGG 55 6.002665E-11 40.909092 2 ACAACGG 50 1.0804797E-9 40.500004 2 CGTTCGT 45 1.925946E-8 40.000004 41 CGGGATC 85 0.0 39.705883 6 >>END_MODULE