SRR2936472.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936472.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	797296
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCCGAGAACTTCGTATGCCGTCTTCTGC	2367	0.2968784491581546	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	1809	0.22689189460376072	No Hit
CCTGTCTCTTATACACATCTGACGCCGAGAACTTCGTATGCCGTCTTCTGC	1702	0.21347153378419056	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1533	0.19227488912524332	No Hit
CTGTCTCTTATACACATCTGACGCCGAGAACTTCGTATGCCGTCTTCTGCT	1285	0.16116975376773496	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCGAGAACTTCGTATGC	955	0.11977985591298589	No Hit
GAATCTGTCTCTTATACACATCTGACGCCGAGAACTTCGTATGCCGTCTTC	892	0.11187814814071562	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCTGTCTCTTATACACATCTGAC	873	0.10949509341574523	No Hit
TCTGTCTCTTATACACATCTGACGCCGAGAACTTCGTATGCCGTCTTCTGC	854	0.1071120386907748	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCGAGAACTTCGTATGCCG	798	0.10008829844875679	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTCGACA	25	3.889727E-5	45.0	38
CGTTGAT	50	2.1827873E-11	45.0	25
TCGTAAG	25	3.889727E-5	45.0	1
TTACGAG	20	7.031985E-4	45.0	1
TACAGCG	25	3.889727E-5	45.0	1
TACGTTG	30	2.164661E-6	44.999996	1
TTAAGCG	65	0.0	41.538464	1
CGTTAGG	120	0.0	41.249996	2
CGGTCTA	60	3.6379788E-12	41.249996	31
TCGTTGA	55	6.002665E-11	40.909092	24
CGTAAGG	110	0.0	40.909092	2
CACGACC	90	0.0	40.0	27
ATACTCG	45	1.9270374E-8	40.0	12
TACTCGA	45	1.9270374E-8	40.0	13
GTATCCG	40	3.4564437E-7	39.375	9
TTAGACG	35	6.245882E-6	38.571426	1
CGTTTTT	970	0.0	38.041237	1
TCACGCA	30	1.1396082E-4	37.499996	9
TTAATCG	60	1.546141E-10	37.499996	20
AGGCGAC	30	1.1396082E-4	37.499996	37