SRR2936471.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936471.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	542551
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCATAGCAGGTCGTATGCCGTCTTCTGC	1488	0.2742599313244285	Illumina Single End Adapter 2 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCATAGCAGGTCGTATGCCGTCTTCTGC	1188	0.21896559033160015	Illumina Single End Adapter 2 (95% over 21bp)
GAATGATACGGCTGTCTCTTATACACATCTGACGCATAGCAGGTCGTATGC	992	0.18283995421628566	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	970	0.17878503587681158	No Hit
GAATCTGTCTCTTATACACATCTGACGCATAGCAGGTCGTATGCCGTCTTC	959	0.17675757670707454	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCATAGCAGGTCGTATGCCG	904	0.16662028085838934	No Hit
CTGTCTCTTATACACATCTGACGCATAGCAGGTCGTATGCCGTCTTCTGCT	884	0.16293399145886747	Illumina Single End Adapter 2 (95% over 22bp)
TCTGTCTCTTATACACATCTGACGCATAGCAGGTCGTATGCCGTCTTCTGC	602	0.11095731092560883	Illumina Single End Adapter 2 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCAACTA	20	7.029992E-4	45.0	10
TAGCGAG	45	3.8380676E-10	45.0	1
TTGTACG	35	1.2103374E-7	45.0	1
ATCCGGT	20	7.029992E-4	45.0	44
CGTAAGG	35	1.2103374E-7	45.0	2
CGGTCTA	40	6.8030204E-9	45.0	31
ATCGGCT	20	7.029992E-4	45.0	13
ACGACTT	20	7.029992E-4	45.0	14
TATCCGG	20	7.029992E-4	45.0	2
CTCGTCC	55	6.002665E-11	40.909092	37
GTTTGCG	45	1.9250365E-8	40.0	1
CGTATGG	45	1.9250365E-8	40.0	2
CGAATGG	45	1.9250365E-8	40.0	2
ACGGTCT	45	1.9250365E-8	40.0	30
TCGATAG	40	3.4537152E-7	39.375	1
GCTACGA	40	3.4537152E-7	39.375	10
ACGGGTA	35	6.242193E-6	38.571426	5
TTACGCG	35	6.242193E-6	38.571426	1
GCCGTTG	70	0.0	38.571426	14
TGCCGTT	70	0.0	38.571426	13