##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2936471.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 542551 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.12425928622378 33.0 31.0 34.0 30.0 34.0 2 32.142685203787295 33.0 31.0 34.0 30.0 34.0 3 32.17972503967369 34.0 31.0 34.0 30.0 34.0 4 35.81666792614888 37.0 35.0 37.0 35.0 37.0 5 34.867417072312094 37.0 35.0 37.0 33.0 37.0 6 35.35893031254205 37.0 35.0 37.0 33.0 37.0 7 35.90968406656702 37.0 35.0 37.0 35.0 37.0 8 35.921870939321835 37.0 35.0 37.0 35.0 37.0 9 37.775737211801285 39.0 38.0 39.0 35.0 39.0 10 37.43002777619063 39.0 37.0 39.0 35.0 39.0 11 37.347217127975064 39.0 37.0 39.0 35.0 39.0 12 37.18234230514735 39.0 37.0 39.0 34.0 39.0 13 37.03619383246921 39.0 37.0 39.0 33.0 39.0 14 38.077670117647926 40.0 37.0 41.0 33.0 41.0 15 38.227117819338645 40.0 37.0 41.0 33.0 41.0 16 38.29999944705659 40.0 37.0 41.0 34.0 41.0 17 38.30465707371289 40.0 37.0 41.0 34.0 41.0 18 38.27507091499233 40.0 37.0 41.0 34.0 41.0 19 38.22575204911612 40.0 37.0 41.0 34.0 41.0 20 38.22679158272678 40.0 37.0 41.0 34.0 41.0 21 38.1086810272214 40.0 36.0 41.0 34.0 41.0 22 38.14596968764227 40.0 36.0 41.0 34.0 41.0 23 38.15635765117012 40.0 36.0 41.0 34.0 41.0 24 38.133121125940235 40.0 36.0 41.0 34.0 41.0 25 37.961710512007166 40.0 36.0 41.0 34.0 41.0 26 38.00749054005983 40.0 36.0 41.0 34.0 41.0 27 38.02057871057283 40.0 36.0 41.0 34.0 41.0 28 37.88517945778369 40.0 36.0 41.0 34.0 41.0 29 37.850332964090015 40.0 36.0 41.0 34.0 41.0 30 37.73186483851288 40.0 36.0 41.0 33.0 41.0 31 37.70409602046628 40.0 36.0 41.0 33.0 41.0 32 37.67217459741112 40.0 36.0 41.0 33.0 41.0 33 37.546732012290086 40.0 35.0 41.0 33.0 41.0 34 37.43005910965052 40.0 35.0 41.0 33.0 41.0 35 37.36742168017385 40.0 35.0 41.0 33.0 41.0 36 37.29331436123056 40.0 35.0 41.0 33.0 41.0 37 37.22232564311926 40.0 35.0 41.0 33.0 41.0 38 37.146784357599564 39.0 35.0 41.0 32.0 41.0 39 37.08278668733446 39.0 35.0 41.0 32.0 41.0 40 36.93800951431294 39.0 35.0 41.0 32.0 41.0 41 36.85916715663597 39.0 35.0 41.0 31.0 41.0 42 36.86848609623796 39.0 35.0 41.0 32.0 41.0 43 36.74269147047927 39.0 35.0 41.0 31.0 41.0 44 36.60925516679538 39.0 35.0 41.0 31.0 41.0 45 36.6160803316186 39.0 35.0 41.0 31.0 41.0 46 36.52100539857083 39.0 35.0 41.0 31.0 41.0 47 36.450175190903714 39.0 35.0 41.0 31.0 41.0 48 36.41598301357845 38.0 35.0 41.0 31.0 41.0 49 36.35102506492477 38.0 35.0 40.0 31.0 41.0 50 36.19987429753148 38.0 35.0 40.0 31.0 41.0 51 35.08063020803574 37.0 34.0 40.0 27.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 7.0 9 12.0 10 18.0 11 12.0 12 11.0 13 11.0 14 21.0 15 30.0 16 29.0 17 57.0 18 135.0 19 214.0 20 391.0 21 674.0 22 1030.0 23 1395.0 24 2030.0 25 2684.0 26 3575.0 27 4374.0 28 4826.0 29 5967.0 30 7463.0 31 9491.0 32 12821.0 33 18764.0 34 35520.0 35 47036.0 36 38451.0 37 59417.0 38 103837.0 39 182095.0 40 152.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.13677792502456 22.194042587701432 25.452538102408806 11.216641384865202 2 31.600531562931412 24.937747787765574 25.754445204229647 17.707275445073368 3 31.824657958422343 24.4032358248349 26.452628416499095 17.319477800243664 4 28.81996346887205 25.38876529579708 26.247117782475748 19.544153452855124 5 25.46267539825749 31.25254584361655 24.763201984698213 18.52157677342775 6 26.216521580459716 33.785395290028035 24.85757099332597 15.140512136186276 7 79.06574681458517 6.713838883349216 9.07509155821296 5.145322743852652 8 80.53528608370458 5.839635352252599 8.457085140383116 5.167993423659711 9 74.23762927356138 7.635042604289735 10.403077314390721 7.724250807758165 10 42.17907625273937 23.57547954017226 18.36122318454855 15.884221022539815 11 32.34239730458519 26.008061914916752 23.586907037310777 18.062633743187277 12 28.82383407274155 22.588475553450273 29.160576609387874 19.427113764420305 13 25.520550141829982 24.654640761882295 30.16398458393773 19.660824512349993 14 20.373199938807595 29.111548960374233 29.389310866628204 21.125940234189965 15 18.530423867986602 25.747994197780482 35.80142696262655 19.920154971606355 16 22.88927676845126 24.674362410169735 31.38764835010902 21.04871247126998 17 24.009724431435938 24.190536926482487 27.280569015631713 24.519169626449862 18 25.534189412608217 23.929547636996336 29.669653175461846 20.8666097749336 19 25.15358003210758 26.02888945002405 26.8997753206611 21.917755197207267 20 26.040685576102522 26.71122161787555 27.355032061502055 19.893060744519868 21 24.68560559283828 26.815912236821976 28.870281319175522 19.628200851164223 22 23.735648814581488 24.664040799851076 28.01672100871623 23.583589376851208 23 21.54617722573546 26.839135860038965 28.663664798332324 22.951022115893252 24 22.777213570705797 24.957469436053017 29.27227117819339 22.993045815047804 25 22.263529142882422 27.019764040615534 27.390604754207438 23.326102062294606 26 20.84449203853647 27.739880674812138 27.53676612889848 23.87886115775291 27 21.363337271519175 27.384706691168205 29.125741174562393 22.126214862750228 28 19.84624486914594 27.296420060049652 30.185549376924936 22.67178569387947 29 21.626169705705088 26.838398602159057 28.697025717397995 22.838405974737856 30 21.782099747304862 27.120399741222485 28.705504183016895 22.391996328455757 31 23.39300821489593 28.40894220082536 26.266102172883286 21.931947411395427 32 25.76624133030812 28.2552239328653 25.51280893409099 20.465725802735594 33 24.292462828379268 26.475667725246105 26.504605097032353 22.727264349342274 34 22.159944410755855 27.733429668362973 27.835171255789774 22.27145466509139 35 22.645981668082815 27.556856406125874 27.544138707697524 22.253023218093784 36 24.060410910679366 27.47981295767587 27.331992752755042 21.127783378889724 37 22.593636358609608 28.678225641460436 27.991285611859528 20.73685238807043 38 23.907982844009133 27.99792093277867 24.96539495826199 23.12870126495021 39 24.274031381381658 26.085289677836737 26.646711553383923 22.99396738739768 40 24.92945363661665 25.442032177620167 27.275223896002405 22.35329028976078 41 21.971943651380236 25.938575359735765 27.174588195395454 24.914892793488537 42 23.806978514462234 25.37014953432949 27.964191384773045 22.85868056643523 43 23.377157170477982 25.143995679668823 28.332636010255257 23.146211139597934 44 22.219477984558132 26.177446912824788 27.880328300933922 23.722746801683158 45 21.964571072581197 25.595381816640277 26.76854341803812 25.671503692740405 46 23.09220699989494 26.78937095314542 26.77038656273788 23.34803548422176 47 21.342509736411877 26.67177832130067 28.96077972393379 23.024932218353666 48 22.173583681534087 26.022069814634936 27.99405032890917 23.810296174921806 49 23.85729636476571 23.897845548160447 29.419907068644235 22.824951018429605 50 21.7632996713673 25.24334117898594 29.231537680328668 23.761821469318093 51 21.308595873936277 25.76624133030812 26.00640308468697 26.918759711068635 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 191.0 1 361.5 2 532.0 3 1174.5 4 1817.0 5 1313.0 6 809.0 7 797.5 8 786.0 9 806.5 10 827.0 11 870.0 12 913.0 13 852.5 14 792.0 15 813.5 16 835.0 17 971.0 18 1107.0 19 1098.0 20 1089.0 21 1434.0 22 1779.0 23 1729.5 24 1680.0 25 2152.5 26 3411.0 27 4197.0 28 5613.0 29 7029.0 30 7666.5 31 8304.0 32 9616.5 33 10929.0 34 12116.0 35 13303.0 36 15174.0 37 17045.0 38 19074.0 39 21103.0 40 23369.0 41 25635.0 42 29200.0 43 32765.0 44 36533.0 45 40301.0 46 45231.0 47 50161.0 48 52737.0 49 55313.0 50 52736.5 51 50160.0 52 44558.5 53 38957.0 54 35519.5 55 32082.0 56 29616.5 57 27151.0 58 25333.0 59 23515.0 60 22163.0 61 20811.0 62 18804.5 63 16798.0 64 13602.5 65 10407.0 66 9069.0 67 7731.0 68 6406.0 69 5081.0 70 4215.5 71 3350.0 72 2740.5 73 2131.0 74 1607.0 75 947.5 76 812.0 77 580.5 78 349.0 79 245.5 80 142.0 81 114.5 82 87.0 83 51.0 84 15.0 85 9.5 86 4.0 87 3.5 88 3.0 89 4.5 90 6.0 91 4.0 92 2.0 93 3.5 94 5.0 95 3.5 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 542551.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 31.313463250061275 #Duplication Level Percentage of deduplicated Percentage of total 1 74.75368982988286 23.407969192945163 2 10.03283432480911 6.283255778477267 3 3.4294361359437984 3.2216256723392482 4 1.694497088452435 2.1224228922636463 5 1.0574503966029654 1.6556217066394838 6 0.7080173601973636 1.3302285353367325 7 0.5515618693064861 1.2089918627264626 8 0.4603641719062898 1.1532477262905996 9 0.3884371815829245 1.0946982069408857 >10 6.578595105288211 49.48524189063638 >50 0.30795013983999087 5.767318079956611 >100 0.03244685381455842 1.793927798669399 >500 0.00353965677977001 0.9811091070675706 >1k 0.0011798855932566698 0.49434154971056654 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GCTGTCTCTTATACACATCTGACGCATAGCAGGTCGTATGCCGTCTTCTGC 1488 0.2742599313244285 Illumina Single End Adapter 2 (95% over 21bp) CCTGTCTCTTATACACATCTGACGCATAGCAGGTCGTATGCCGTCTTCTGC 1188 0.21896559033160015 Illumina Single End Adapter 2 (95% over 21bp) GAATGATACGGCTGTCTCTTATACACATCTGACGCATAGCAGGTCGTATGC 992 0.18283995421628566 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 970 0.17878503587681158 No Hit GAATCTGTCTCTTATACACATCTGACGCATAGCAGGTCGTATGCCGTCTTC 959 0.17675757670707454 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCATAGCAGGTCGTATGCCG 904 0.16662028085838934 No Hit CTGTCTCTTATACACATCTGACGCATAGCAGGTCGTATGCCGTCTTCTGCT 884 0.16293399145886747 Illumina Single End Adapter 2 (95% over 22bp) TCTGTCTCTTATACACATCTGACGCATAGCAGGTCGTATGCCGTCTTCTGC 602 0.11095731092560883 Illumina Single End Adapter 2 (95% over 21bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.843144699760944E-4 0.0 0.0 0.17915366481676376 0.0 2 1.843144699760944E-4 0.0 0.0 0.9317096457291573 0.0 3 1.843144699760944E-4 0.0 0.0 1.2990483843915135 0.0 4 1.843144699760944E-4 0.0 0.0 1.766654194720865 0.0 5 1.843144699760944E-4 0.0 0.0 3.049482905754482 0.0 6 1.843144699760944E-4 0.0 0.0 3.7981682827973775 0.0 7 1.843144699760944E-4 0.0 0.0 4.489347545207732 0.0 8 3.686289399521888E-4 0.0 0.0 5.606108918792888 0.0 9 3.686289399521888E-4 0.0 0.0 6.024502765638622 0.0 10 3.686289399521888E-4 0.0 0.0 7.072883470862647 0.0 11 3.686289399521888E-4 0.0 0.0 8.280143249206066 0.0 12 3.686289399521888E-4 0.0 0.0 9.40685760416993 0.0 13 5.529434099282832E-4 0.0 0.0 9.920357717523329 0.0 14 5.529434099282832E-4 0.0 0.0 10.181715635949432 0.0 15 5.529434099282832E-4 0.0 0.0 10.54094453793284 0.0 16 5.529434099282832E-4 0.0 0.0 11.190653044598573 0.0 17 7.372578799043776E-4 0.0 0.0 11.955926723939315 0.0 18 7.372578799043776E-4 0.0 0.0 12.883581451329 0.0 19 7.372578799043776E-4 0.0 0.0 13.411458093340533 0.0 20 7.372578799043776E-4 0.0 0.0 13.913715024025391 0.0 21 9.215723498804721E-4 0.0 0.0 14.533564586554997 0.0 22 9.215723498804721E-4 0.0 0.0 15.151755318854818 0.0 23 9.215723498804721E-4 0.0 0.0 15.754095006736694 0.0 24 9.215723498804721E-4 0.0 0.0 16.24603032710289 0.0 25 0.0011058868198565665 0.0 0.0 16.670506551457834 0.0 26 0.0011058868198565665 0.0 0.0 17.0940612034629 0.0 27 0.0011058868198565665 0.0 0.0 17.545447340434354 0.0 28 0.0011058868198565665 0.0 0.0 17.986696181557125 0.0 29 0.0011058868198565665 0.0 0.0 18.42536462010023 0.0 30 0.0011058868198565665 0.0 0.0 18.96337855796045 0.0 31 0.0011058868198565665 0.0 0.0 19.434117714279395 0.0 32 0.0011058868198565665 0.0 0.0 19.862095913563888 0.0 33 0.0011058868198565665 0.0 0.0 20.332650755412857 0.0 34 0.0011058868198565665 0.0 0.0 20.80375854067175 0.0 35 0.0011058868198565665 0.0 0.0 21.3084115594663 0.0 36 0.0011058868198565665 0.0 0.0 21.774358539565867 0.0 37 0.0011058868198565665 0.0 0.0 22.21265834916902 0.0 38 0.0011058868198565665 0.0 0.0 22.700907380135693 0.0 39 0.0011058868198565665 0.0 0.0 23.333290326623672 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GCAACTA 20 7.029992E-4 45.0 10 TAGCGAG 45 3.8380676E-10 45.0 1 TTGTACG 35 1.2103374E-7 45.0 1 ATCCGGT 20 7.029992E-4 45.0 44 CGTAAGG 35 1.2103374E-7 45.0 2 CGGTCTA 40 6.8030204E-9 45.0 31 ATCGGCT 20 7.029992E-4 45.0 13 ACGACTT 20 7.029992E-4 45.0 14 TATCCGG 20 7.029992E-4 45.0 2 CTCGTCC 55 6.002665E-11 40.909092 37 GTTTGCG 45 1.9250365E-8 40.0 1 CGTATGG 45 1.9250365E-8 40.0 2 CGAATGG 45 1.9250365E-8 40.0 2 ACGGTCT 45 1.9250365E-8 40.0 30 TCGATAG 40 3.4537152E-7 39.375 1 GCTACGA 40 3.4537152E-7 39.375 10 ACGGGTA 35 6.242193E-6 38.571426 5 TTACGCG 35 6.242193E-6 38.571426 1 GCCGTTG 70 0.0 38.571426 14 TGCCGTT 70 0.0 38.571426 13 >>END_MODULE