##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2936470.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 627917 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.794256247242867 33.0 31.0 34.0 30.0 34.0 2 31.850048652927057 33.0 31.0 34.0 30.0 34.0 3 31.903089102540623 33.0 31.0 34.0 30.0 34.0 4 35.61559409922012 37.0 35.0 37.0 33.0 37.0 5 34.66333448529026 37.0 35.0 37.0 33.0 37.0 6 35.13300324724446 37.0 35.0 37.0 32.0 37.0 7 35.700506595616936 37.0 35.0 37.0 33.0 37.0 8 35.63441824317545 37.0 35.0 37.0 33.0 37.0 9 37.501098075064064 39.0 37.0 39.0 35.0 39.0 10 37.17961291062354 39.0 37.0 39.0 34.0 39.0 11 37.10339264584332 39.0 37.0 39.0 34.0 39.0 12 37.03387868141809 39.0 37.0 39.0 33.0 39.0 13 36.8952887085395 39.0 37.0 39.0 33.0 39.0 14 37.93246081886619 40.0 37.0 41.0 33.0 41.0 15 37.9717908577089 40.0 37.0 41.0 33.0 41.0 16 38.09809098973272 40.0 37.0 41.0 33.0 41.0 17 38.005545318887684 40.0 37.0 41.0 33.0 41.0 18 38.022974374001656 40.0 37.0 41.0 33.0 41.0 19 37.978681895855665 40.0 37.0 41.0 33.0 41.0 20 37.89909653664417 40.0 36.0 41.0 33.0 41.0 21 37.91793501370404 40.0 36.0 41.0 33.0 41.0 22 37.95210991261584 40.0 37.0 41.0 33.0 41.0 23 37.95052530828119 40.0 36.0 41.0 34.0 41.0 24 37.86035893278889 40.0 36.0 41.0 33.0 41.0 25 37.77953455631875 39.0 36.0 41.0 33.0 41.0 26 37.79238020311602 40.0 36.0 41.0 33.0 41.0 27 37.777656919624725 40.0 36.0 41.0 33.0 41.0 28 37.69812889283138 40.0 36.0 41.0 33.0 41.0 29 37.66100455951981 40.0 36.0 41.0 33.0 41.0 30 37.59377911411858 40.0 36.0 41.0 33.0 41.0 31 37.60561188819541 40.0 36.0 41.0 33.0 41.0 32 37.40778319427567 40.0 36.0 41.0 33.0 41.0 33 37.36273583929086 40.0 36.0 41.0 33.0 41.0 34 37.307088357219186 40.0 36.0 41.0 32.0 41.0 35 37.207693054973824 40.0 35.0 41.0 32.0 41.0 36 37.19049810723392 40.0 35.0 41.0 32.0 41.0 37 37.14591259672855 39.0 35.0 41.0 32.0 41.0 38 37.046767327528954 39.0 35.0 41.0 31.0 41.0 39 36.994234906842784 39.0 35.0 41.0 31.0 41.0 40 36.813491273528186 39.0 35.0 41.0 31.0 41.0 41 36.73293922604421 39.0 35.0 41.0 31.0 41.0 42 36.79767708152511 39.0 35.0 41.0 31.0 41.0 43 36.75673695727301 39.0 35.0 41.0 31.0 41.0 44 36.691573886357595 39.0 35.0 41.0 31.0 41.0 45 36.668505550892874 39.0 35.0 41.0 31.0 41.0 46 36.5185287227452 39.0 35.0 40.0 31.0 41.0 47 36.33284335350054 39.0 35.0 40.0 30.0 41.0 48 36.3143488709495 39.0 35.0 40.0 30.0 41.0 49 36.347219457348665 39.0 35.0 40.0 30.0 41.0 50 36.19447315489149 38.0 35.0 40.0 30.0 41.0 51 35.022649490298875 37.0 34.0 40.0 27.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 4.0 9 5.0 10 8.0 11 10.0 12 7.0 13 9.0 14 9.0 15 16.0 16 26.0 17 51.0 18 117.0 19 252.0 20 482.0 21 872.0 22 1529.0 23 2053.0 24 2655.0 25 3344.0 26 4357.0 27 5132.0 28 6051.0 29 7573.0 30 9792.0 31 12915.0 32 17469.0 33 23776.0 34 38719.0 35 51883.0 36 49255.0 37 73063.0 38 127808.0 39 188600.0 40 75.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 45.00483344136247 20.725987670344967 23.905388769534827 10.363790118757734 2 27.85224798818952 30.744827739972003 24.614877443993393 16.788046827845083 3 27.58055602890191 30.920965669029503 26.068254243793366 15.430224058275218 4 26.508280553003022 23.128693760481084 32.70878157463486 17.654244111881027 5 28.582758549298713 27.91324331081974 24.104618922564605 19.39937921731694 6 22.55091039102302 36.923988361519115 25.385361441082182 15.139739806375681 7 72.01509116650767 5.6985238494896615 16.472081501217517 5.814303482785145 8 70.76619999140014 10.455362731061589 11.406762358719384 7.371674918818888 9 65.50706542425193 6.579372751494226 12.909508740804915 15.004053083448927 10 40.084597168097055 22.839961332469098 20.67072558952855 16.404715909905292 11 28.762400126131322 23.03441378398737 27.12810769576234 21.075078394118968 12 24.482853625558793 19.9752515061704 32.164760629191434 23.37713423907937 13 22.235900604697754 23.365030728583555 36.89197776139203 17.50709090532666 14 18.89835758547706 29.3519684926511 29.282532564017217 22.46714135785462 15 15.25758977699282 24.248905508212072 40.30102704656826 20.192477668226854 16 17.677336335853305 25.995473924101436 30.049353656613853 26.27783608343141 17 17.633540738664504 25.966807715032402 30.55117157203898 25.848479974264116 18 18.544170646757454 25.257159783856785 32.40810489284412 23.790564676541646 19 19.500029462492655 27.242454018604366 28.3539066468976 24.90360987200538 20 20.552238592043214 27.531186446616353 32.03592194509784 19.88065301624259 21 20.872981620182284 30.31053467257615 29.162134485927282 19.654349221314284 22 18.518211801878273 24.096496829995047 29.6144235623498 27.770867805776877 23 18.009068077468836 27.95433154381869 30.048398116311553 23.98820226240092 24 21.448694652318697 23.58942344290726 28.72784141853143 26.23404048624261 25 17.397203770562033 30.97590923641182 26.613230729539094 25.013656263487054 26 17.30021642987847 25.187723855222906 29.376812540510926 28.135247174387697 27 21.02220516405831 26.559083445742033 25.993562843496832 26.425148546702832 28 15.27574504273654 24.75088268035425 31.735723033458246 28.237649243450964 29 18.399406290958837 22.684049006476968 27.704139241332854 31.21240546123134 30 18.528563488486537 25.3533508409551 29.12805354847854 26.99003212207983 31 22.002908027653337 24.232661323072954 23.244314137059515 30.520116512214194 32 20.856896691760216 28.59916199115488 25.42103494570142 25.12290637138348 33 19.432982384614526 22.426849408440923 28.63595029279347 29.504217914151077 34 22.002908027653337 21.82103685678203 28.126488054949938 28.0495670606147 35 17.340189865858065 22.537692083507853 30.424880995418185 29.697237055215897 36 19.42740839951777 21.715608910094804 30.686539781531636 28.170442908855787 37 18.770474441685764 24.69705390999129 31.07082623977373 25.46164540854922 38 17.110700936588753 25.1819906134091 30.162107412285383 27.545201037716765 39 22.827539308539187 24.388892162499186 30.816334005927537 21.967234523034097 40 21.098170618091245 20.482802663409334 34.96194560746086 23.457081111038562 41 20.29408345370487 22.489755811675746 29.977369620507172 27.238791114112214 42 18.712504996679495 20.609571010181284 34.39674351864976 26.281180474489464 43 21.278449221792055 20.984779835551514 30.75072023850286 26.986050704153573 44 20.145656193414098 21.488349574864195 29.731317992664636 28.63467623905707 45 19.492862910225394 20.934454712963657 28.585306656771515 30.987375720039434 46 25.61851327484365 22.519696074481182 27.925346821315557 23.936443829359614 47 17.038716900482072 20.741276315181782 37.071619338224636 25.14838744611151 48 19.453526501114002 21.79030031039134 30.279638869468418 28.476534319026243 49 19.38918678742573 18.35943285497924 36.748965229480966 25.502415128114066 50 20.801953124377903 18.739897152012126 32.802424524260374 27.655725199349597 51 19.399060703882835 18.56805915431498 28.20579790004093 33.827082241761254 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 193.0 1 298.5 2 404.0 3 1113.5 4 1823.0 5 1276.5 6 730.0 7 726.0 8 722.0 9 781.5 10 841.0 11 848.5 12 856.0 13 888.0 14 920.0 15 962.0 16 1004.0 17 967.0 18 930.0 19 971.0 20 1012.0 21 1317.0 22 1622.0 23 1868.0 24 2114.0 25 2350.5 26 3284.5 27 3982.0 28 4776.0 29 5570.0 30 6624.5 31 7679.0 32 8850.5 33 10022.0 34 11219.0 35 12416.0 36 14081.0 37 15746.0 38 17772.0 39 19798.0 40 22562.5 41 25327.0 42 29389.0 43 33451.0 44 39116.5 45 44782.0 46 75685.5 47 106589.0 48 94961.5 49 83334.0 50 79036.5 51 74739.0 52 60487.5 53 46236.0 54 38714.0 55 31192.0 56 27901.5 57 24611.0 58 21965.0 59 19319.0 60 16952.0 61 14585.0 62 13066.0 63 11547.0 64 9655.5 65 7764.0 66 6467.5 67 5171.0 68 4285.5 69 3400.0 70 2580.0 71 1760.0 72 1594.0 73 1428.0 74 1183.0 75 673.0 76 408.0 77 286.5 78 165.0 79 130.5 80 96.0 81 71.5 82 47.0 83 39.5 84 32.0 85 18.5 86 5.0 87 4.0 88 3.0 89 6.0 90 9.0 91 8.5 92 8.0 93 4.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 627917.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 33.38686970616815 #Duplication Level Percentage of deduplicated Percentage of total 1 72.85797180230833 24.32499611619341 2 11.837310956029915 7.904215171207351 3 4.373250115341926 4.380273953802172 4 2.1392367443043288 2.8568967381094392 5 1.2744282904732438 2.12745856419424 6 0.8575720670456519 1.717898811966149 7 0.6274602386797618 1.4664253264221663 8 0.48522792858151614 1.2960193303475955 9 0.37673377635980454 1.1320165354713736 >10 4.970733858176266 36.812812848600146 >50 0.13832882861314968 2.8913531656331632 >100 0.051693818304651466 3.1641404233115025 >500 0.003829171726270479 0.8373785766743571 >1k 0.004307818192054289 2.577496004423799 >5k 4.7864646578380985E-4 0.9204772140542552 >10k+ 0.0014359393973514295 5.590141219588872 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATGATACGGCTGTCTCTTATACACATCTGACGCCCCATGTTTCGTATGC 12719 2.0255861841612823 No Hit GAATCTGTCTCTTATACACATCTGACGCCCCATGTTTCGTATGCCGTCTTC 11303 1.8000786728182228 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCCCCATGTTTCGTATGCCG 10959 1.7452943621529597 No Hit GCTGTCTCTTATACACATCTGACGCCCCATGTTTCGTATGCCGTCTTCTGC 5760 0.9173186902090563 TruSeq Adapter, Index 14 (95% over 21bp) CCTGTCTCTTATACACATCTGACGCCCCATGTTTCGTATGCCGTCTTCTGC 2903 0.4623222495966824 TruSeq Adapter, Index 14 (95% over 21bp) GAATGACTGTCTCTTATACACATCTGACGCCCCATGTTTCGTATGCCGTCT 2457 0.3912937537923006 No Hit CTGTCTCTTATACACATCTGACGCCCCATGTTTCGTATGCCGTCTTCTGCT 1982 0.31564681319346344 Illumina Paired End PCR Primer 2 (95% over 21bp) GAACTGTCTCTTATACACATCTGACGCCCCATGTTTCGTATGCCGTCTTCT 1780 0.2834769563493264 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCCCATGTTTCGTA 1550 0.24684791142778423 No Hit GAATGATCTGTCTCTTATACACATCTGACGCCCCATGTTTCGTATGCCGTC 1547 0.2463701412766337 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCCCATGTTT 1517 0.2415924397651282 No Hit TCTGTCTCTTATACACATCTGACGCCCCATGTTTCGTATGCCGTCTTCTGC 1370 0.21818170235875126 TruSeq Adapter, Index 14 (95% over 21bp) ACTGTCTCTTATACACATCTGACGCCCCATGTTTCGTATGCCGTCTTCTGC 1023 0.1629196215423376 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 996 0.15861969018198266 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCCCATGTTTCGTATGCC 672 0.10702051385772324 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 6.370268682007335E-4 0.0 0.0 0.3353946461076862 0.0 2 6.370268682007335E-4 0.0 0.0 2.2209941759818577 0.0 3 6.370268682007335E-4 0.0 0.0 2.950071426637597 0.0 4 6.370268682007335E-4 0.0 0.0 4.084138508751953 0.0 5 6.370268682007335E-4 0.0 0.0 8.132762769601715 0.0 6 6.370268682007335E-4 0.0 0.0 9.554925252859853 0.0 7 6.370268682007335E-4 0.0 0.0 11.284453200024844 0.0 8 6.370268682007335E-4 0.0 0.0 13.644797003425612 0.0 9 6.370268682007335E-4 0.0 0.0 14.425154916971511 0.0 10 6.370268682007335E-4 0.0 0.0 17.92673235475389 0.0 11 6.370268682007335E-4 0.0 0.0 20.186107399544845 0.0 12 6.370268682007335E-4 0.0 0.0 24.09028581803009 0.0 13 6.370268682007335E-4 0.0 0.0 24.92415398850485 0.0 14 6.370268682007335E-4 0.0 0.0 25.277226130205108 0.0 15 6.370268682007335E-4 0.0 0.0 26.043091682499437 0.0 16 6.370268682007335E-4 0.0 0.0 27.166966334722584 0.0 17 6.370268682007335E-4 0.0 0.0 28.521126199800293 0.0 18 6.370268682007335E-4 0.0 0.0 29.968769757786458 0.0 19 7.962835852509169E-4 0.0 0.0 31.101403529447364 0.0 20 9.555403023011003E-4 0.0 0.0 31.946101156681536 0.0 21 9.555403023011003E-4 0.0 0.0 32.93014841133462 0.0 22 0.0011147970193512836 0.0 0.0 34.040964012759645 0.0 23 0.0011147970193512836 0.0 0.0 35.10989509760048 0.0 24 0.0011147970193512836 0.0 0.0 35.9135044918357 0.0 25 0.0011147970193512836 0.0 0.0 36.61614512746112 0.0 26 0.0011147970193512836 0.0 0.0 37.30556745557136 0.0 27 0.0011147970193512836 0.0 0.0 38.01808200765388 0.0 28 0.0011147970193512836 0.0 0.0 38.6877565028499 0.0 29 0.0011147970193512836 0.0 0.0 39.372241872731585 0.0 30 0.0011147970193512836 0.0 0.0 40.13444452053376 0.0 31 0.0011147970193512836 0.0 0.0 40.81972617400071 0.0 32 0.001274053736401467 0.0 0.0 41.42840534656651 0.0 33 0.0014333104534516505 0.0 0.0 42.01685891606693 0.0 34 0.0014333104534516505 0.0 0.0 42.62553808863273 0.0 35 0.0015925671705018338 0.0 0.0 43.26638711804267 0.0 36 0.0015925671705018338 0.0 0.0 43.849585215880445 0.0 37 0.0015925671705018338 0.0 0.0 44.40236528076163 0.005573985096756418 38 0.0015925671705018338 0.0 0.0 44.95132318443361 0.005573985096756418 39 0.0015925671705018338 0.0 0.0 45.534521282271385 0.005573985096756418 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TAAACGG 35 1.2107557E-7 45.000004 2 GCCGGAT 25 3.888776E-5 45.000004 19 TCGATTG 25 3.888776E-5 45.000004 1 TACGGGT 25 3.888776E-5 45.000004 4 CGTATCG 20 7.0308393E-4 45.0 15 TCGGAGT 20 7.0308393E-4 45.0 4 CGGATAA 20 7.0308393E-4 45.0 21 TGTTACG 20 7.0308393E-4 45.0 1 AATTCGG 20 7.0308393E-4 45.0 2 CTCGCAC 20 7.0308393E-4 45.0 41 ATACGAG 20 7.0308393E-4 45.0 1 GCGTCGA 20 7.0308393E-4 45.0 29 TATCGCG 20 7.0308393E-4 45.0 1 CTGGCGT 20 7.0308393E-4 45.0 14 GCGTAAG 40 6.8066583E-9 45.0 1 AGACCGG 30 2.1639225E-6 44.999996 2 CGTTTTT 660 0.0 41.25 1 TTTACGG 55 6.002665E-11 40.909092 2 TACGGCT 1595 0.0 40.203762 7 ATAGGCG 40 3.4548793E-7 39.375 12 >>END_MODULE