##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2936469.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1069187 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.993365052137747 33.0 31.0 34.0 30.0 34.0 2 32.05096676259625 33.0 31.0 34.0 30.0 34.0 3 32.07891323033295 33.0 31.0 34.0 30.0 34.0 4 35.747024608417426 37.0 35.0 37.0 35.0 37.0 5 34.83202283604271 37.0 35.0 37.0 33.0 37.0 6 35.30062842140804 37.0 35.0 37.0 33.0 37.0 7 35.85060050299901 37.0 35.0 37.0 35.0 37.0 8 35.79977777507583 37.0 35.0 37.0 35.0 37.0 9 37.656774726965445 39.0 37.0 39.0 35.0 39.0 10 37.37592675556287 39.0 37.0 39.0 34.0 39.0 11 37.27111066632872 39.0 37.0 39.0 34.0 39.0 12 37.115643942547 39.0 37.0 39.0 34.0 39.0 13 36.96003224880213 39.0 37.0 39.0 33.0 39.0 14 37.86942695711789 40.0 37.0 41.0 33.0 41.0 15 37.98854269646002 40.0 37.0 41.0 33.0 41.0 16 38.135053082388765 40.0 37.0 41.0 33.0 41.0 17 38.111386502080556 40.0 37.0 41.0 33.0 41.0 18 38.113829479782304 40.0 37.0 41.0 34.0 41.0 19 38.07467168979795 40.0 37.0 41.0 34.0 41.0 20 37.996780731527785 40.0 36.0 41.0 33.0 41.0 21 37.99312281200576 40.0 36.0 41.0 33.0 41.0 22 38.050613222944165 40.0 36.0 41.0 34.0 41.0 23 38.062319313646725 40.0 36.0 41.0 34.0 41.0 24 38.01294254419479 40.0 36.0 41.0 34.0 41.0 25 37.90094997413923 40.0 36.0 41.0 34.0 41.0 26 37.90704245375225 40.0 36.0 41.0 34.0 41.0 27 37.88857608631605 40.0 36.0 41.0 34.0 41.0 28 37.80175404302521 40.0 36.0 41.0 33.0 41.0 29 37.75572280620696 40.0 36.0 41.0 33.0 41.0 30 37.63990489970417 40.0 36.0 41.0 33.0 41.0 31 37.57231896758939 40.0 36.0 41.0 33.0 41.0 32 37.504474895411185 40.0 35.0 41.0 33.0 41.0 33 37.37338089595178 40.0 35.0 41.0 33.0 41.0 34 37.26751073479195 40.0 35.0 41.0 32.0 41.0 35 37.21337801525832 40.0 35.0 41.0 32.0 41.0 36 37.16222793580543 40.0 35.0 41.0 32.0 41.0 37 37.0894436613988 39.0 35.0 41.0 32.0 41.0 38 37.03694957009391 39.0 35.0 41.0 32.0 41.0 39 36.95866111353767 39.0 35.0 41.0 32.0 41.0 40 36.83664878080261 39.0 35.0 41.0 31.0 41.0 41 36.690759427490235 39.0 35.0 41.0 31.0 41.0 42 36.80671201576525 39.0 35.0 41.0 31.0 41.0 43 36.73160915723816 39.0 35.0 41.0 31.0 41.0 44 36.62579791935368 39.0 35.0 41.0 31.0 41.0 45 36.60831828295705 39.0 35.0 41.0 31.0 41.0 46 36.515303684014114 39.0 35.0 41.0 31.0 41.0 47 36.369816505438244 39.0 35.0 41.0 31.0 41.0 48 36.35227046344559 39.0 35.0 40.0 31.0 41.0 49 36.379464022663946 39.0 35.0 40.0 31.0 41.0 50 36.268235584607744 39.0 35.0 40.0 31.0 41.0 51 35.04853968482595 37.0 34.0 40.0 27.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 7.0 9 11.0 10 15.0 11 14.0 12 17.0 13 21.0 14 20.0 15 33.0 16 68.0 17 118.0 18 221.0 19 431.0 20 871.0 21 1640.0 22 2396.0 23 3397.0 24 4540.0 25 6054.0 26 7549.0 27 8893.0 28 10322.0 29 12148.0 30 15431.0 31 20412.0 32 28041.0 33 40858.0 34 73252.0 35 83488.0 36 77108.0 37 115822.0 38 204705.0 39 351091.0 40 192.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.88577489251178 20.781678041352915 23.322019440939705 12.010527625195593 2 30.823420037841835 27.901293225600387 23.96456372926345 17.310723007294328 3 29.921332750959373 28.112575255778456 26.09141338231759 15.874678610944578 4 27.2888652780103 23.943332644336305 30.769547328951813 17.998254748701584 5 26.898568725583083 29.280752571813913 24.88311212164009 18.93756658096292 6 24.705687592535263 35.15110078966542 25.728240242352367 14.414971375446953 7 75.20658219750148 5.752875783188535 13.772520616131697 5.268021403178303 8 74.71527431590545 8.62655456903236 10.4089368838192 6.249234231242991 9 68.46248598233984 7.052461356151918 12.52905244826209 11.956000213246138 10 41.99115776753739 22.57958617154904 20.302622459869042 15.126633601044531 11 31.259171688395014 23.762447541917364 26.09178749835155 18.88659327133607 12 27.496312618840296 20.6474639141703 31.04929259334429 20.806930873645115 13 25.67399341742838 22.56181565993601 33.89715737284498 17.867033549790634 14 20.004545509812598 27.201976829123435 31.586242631083245 21.207235029980723 15 17.78313802917544 24.146758237801244 38.12420091153372 19.9459028214896 16 21.978755821011667 25.087473005189924 29.44480245270472 23.48896872109369 17 22.177692022069103 24.829987644817976 29.329107069203047 23.663213263909867 18 22.95940747502542 24.32895274633904 31.02553622518792 21.68610355344762 19 23.062663500397964 25.7802423710726 27.807015985042842 23.350078143486595 20 22.217535379685685 27.895868543107987 30.748783889067116 19.13781218813921 21 21.859693393204367 28.392601107196402 31.265718718989287 18.48198678060994 22 20.173833015178822 23.608685851960416 31.26253873270064 24.95494240016012 23 19.370886477295365 26.571404253886367 31.263567551794026 22.794141717024242 24 21.975949950756977 25.04575906740355 29.19844704434304 23.779843937496434 25 20.565251915707915 29.361000461098012 26.97488839651062 23.09885922668345 26 18.967121747645642 25.329339021144104 30.131118317001608 25.57242091420865 27 21.18534924199415 27.16942873416905 28.63418653612511 23.01103548771169 28 18.432977580161374 25.453826131443797 31.30415914147853 24.809037146916303 29 20.894567554599895 24.43192818468612 31.36813298328543 23.305371277428552 30 21.706586406306847 27.98556286224954 28.710786794078118 21.597063937365494 31 23.955584944448447 26.0219213290098 27.05130159644665 22.97119213009511 32 23.73298590424313 26.003215527311873 27.961619436076194 22.3021791323688 33 22.267760457244616 24.614777396283344 25.537254007016546 27.580208139455493 34 20.552999615595773 25.18857786336721 30.859335177101855 23.399087343935157 35 18.776603157352266 26.42157078228598 28.310482637742506 26.49134342261924 36 22.671712244911323 25.874613140638637 26.84357366859118 24.61010094585886 37 20.072073453942107 28.128101071187732 29.588556538753274 22.21126893611688 38 21.97220879041739 24.845419931218768 26.313918893514415 26.868452384849423 39 20.99688828988755 24.312865756878825 28.768681250333195 25.92156470290043 40 21.325549225720103 23.533769116160222 28.80235169338946 26.33832996473021 41 19.061024872169227 25.84309386477763 25.87741901089332 29.21846225215982 42 19.869209034528104 23.048914736149992 30.508227279231793 26.573648950090117 43 21.656361328747916 22.39271521258676 29.311991260649446 26.638932198015873 44 21.87409686051177 22.765428311417928 29.17833830751777 26.182136520552536 45 19.823099233342717 22.411795130318644 28.609868993917807 29.155236642420828 46 22.85783497180568 24.224387314847636 27.850881090024476 25.066896623322204 47 17.827564308208014 23.72260418430078 33.588043999786755 24.861787507704452 48 19.754823057145288 24.917717854781248 28.735852568353337 26.591606519720123 49 21.494369086043882 21.330412734161563 31.99636733331026 25.17885084648429 50 20.66804029603802 21.803108343068146 29.94490206109876 27.58394929979508 51 19.624724206336218 22.220995952999804 27.026516409196894 31.127763431467088 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 371.0 1 673.5 2 976.0 3 2930.5 4 4885.0 5 3283.5 6 1682.0 7 1755.5 8 1829.0 9 1828.5 10 1828.0 11 1876.0 12 1924.0 13 1978.5 14 2033.0 15 2119.5 16 2206.0 17 2115.0 18 2024.0 19 2206.0 20 2388.0 21 2716.5 22 3045.0 23 3629.5 24 4214.0 25 5027.0 26 7458.5 27 9077.0 28 10095.0 29 11113.0 30 13512.5 31 15912.0 32 18219.0 33 20526.0 34 23681.0 35 26836.0 36 28476.5 37 30117.0 38 33232.0 39 36347.0 40 40905.0 41 45463.0 42 50331.0 43 55199.0 44 63345.0 45 71491.0 46 106228.0 47 140965.0 48 131290.5 49 121616.0 50 118991.0 51 116366.0 52 97480.5 53 78595.0 54 66896.5 55 55198.0 56 50319.0 57 45440.0 58 43116.0 59 40792.0 60 36107.0 61 31422.0 62 28208.0 63 24994.0 64 21253.0 65 17512.0 66 15166.0 67 12820.0 68 10906.0 69 8992.0 70 7694.0 71 6396.0 72 5416.0 73 4436.0 74 3637.0 75 2210.5 76 1583.0 77 1146.0 78 709.0 79 716.5 80 724.0 81 495.0 82 266.0 83 180.0 84 94.0 85 73.5 86 53.0 87 37.0 88 21.0 89 22.5 90 24.0 91 13.5 92 3.0 93 1.5 94 0.0 95 0.5 96 1.0 97 0.5 98 0.0 99 0.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1069187.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 30.843897108593627 #Duplication Level Percentage of deduplicated Percentage of total 1 72.03048455547837 22.21700854311317 2 11.577312096543883 7.141788461997517 3 4.316478158894357 3.994110246132876 4 2.223750132628081 2.743564811440078 5 1.321299550510182 2.037701369278353 6 0.8930414023274355 1.6526926276260945 7 0.6694085165675285 1.4453017186037598 8 0.5100789208081506 1.258625740053526 9 0.4436562519000997 1.2315679006671874 >10 5.717812459920532 41.666959065502645 >50 0.24008115583477843 4.513316617958046 >100 0.04807685041238695 2.7995411887586963 >500 0.003347122497018724 0.725859115414303 >1k 0.003955690223749401 2.5887473468415725 >5k 3.042838633653385E-4 0.5515740911934133 >10k+ 9.128515900960156E-4 3.431641155418745 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATGATACGGCTGTCTCTTATACACATCTGACGCTAGTCACCTCGTATGC 12814 1.1984807147860943 No Hit GAATCTGTCTCTTATACACATCTGACGCTAGTCACCTCGTATGCCGTCTTC 11882 1.1113116788737611 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCTAGTCACCTCGTATGCCG 11868 1.1100022727549064 No Hit GCTGTCTCTTATACACATCTGACGCTAGTCACCTCGTATGCCGTCTTCTGC 5877 0.5496699828935444 Illumina PCR Primer Index 3 (95% over 22bp) CCTGTCTCTTATACACATCTGACGCTAGTCACCTCGTATGCCGTCTTCTGC 4819 0.45071629191151785 RNA PCR Primer, Index 7 (95% over 23bp) CTGTCTCTTATACACATCTGACGCTAGTCACCTCGTATGCCGTCTTCTGCT 3006 0.28114819951982206 TruSeq Adapter, Index 7 (95% over 24bp) CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2763 0.2584206504568424 No Hit GAATGACTGTCTCTTATACACATCTGACGCTAGTCACCTCGTATGCCGTCT 2347 0.21951258292515716 No Hit GAACTGTCTCTTATACACATCTGACGCTAGTCACCTCGTATGCCGTCTTCT 2211 0.20679263777056775 TruSeq Adapter, Index 7 (95% over 21bp) GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTAGTCACCT 2010 0.1879933070641525 No Hit GAATGATCTGTCTCTTATACACATCTGACGCTAGTCACCTCGTATGCCGTC 1857 0.1736833687652394 No Hit CGCTGTCTCTTATACACATCTGACGCTAGTCACCTCGTATGCCGTCTTCTG 1737 0.162459887746484 TruSeq Adapter, Index 7 (95% over 22bp) GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTAGTCACCTCGTA 1679 0.1570352052540856 No Hit GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG 1574 0.1472146593626746 No Hit TCTGTCTCTTATACACATCTGACGCTAGTCACCTCGTATGCCGTCTTCTGC 1362 0.12738650956287345 Illumina PCR Primer Index 3 (95% over 22bp) CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTAGTCACCTCGTATGCC 1200 0.11223481018755373 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 9.35290084896281E-5 0.0 0.0 0.2923716805385774 0.0 2 9.35290084896281E-5 0.0 0.0 1.568013827328615 0.0 3 9.35290084896281E-5 0.0 0.0 2.166131836619787 0.0 4 9.35290084896281E-5 0.0 0.0 2.9687977874777753 0.0 5 9.35290084896281E-5 0.0 0.0 5.645691539459421 0.0 6 9.35290084896281E-5 0.0 0.0 6.727728638675929 0.0 7 9.35290084896281E-5 0.0 0.0 7.986442034929343 0.0 8 9.35290084896281E-5 0.0 0.0 9.723462780598716 0.0 9 9.35290084896281E-5 0.0 0.0 10.43456383214536 0.0 10 1.870580169792562E-4 0.0 0.0 12.956199430034223 0.0 11 1.870580169792562E-4 0.0 0.0 14.779547450539521 0.0 12 1.870580169792562E-4 0.0 0.0 17.406777299013175 0.0 13 1.870580169792562E-4 0.0 0.0 18.091222583140272 0.0 14 1.870580169792562E-4 0.0 0.0 18.412214140276678 0.0 15 1.870580169792562E-4 0.0 0.0 19.01744035421306 0.0 16 1.870580169792562E-4 0.0 0.0 19.909613566195624 0.0 17 1.870580169792562E-4 0.0 0.0 20.92711564955429 0.0 18 1.870580169792562E-4 0.0 0.0 22.032067355850753 0.0 19 1.870580169792562E-4 0.0 0.0 22.89337599503174 0.0 20 1.870580169792562E-4 0.0 0.0 23.615513469580158 0.0 21 1.870580169792562E-4 0.0 0.0 24.385444267466777 0.0 22 1.870580169792562E-4 0.0 0.0 25.273502203075793 0.0 23 1.870580169792562E-4 0.0 0.0 26.047922393369916 0.0 24 2.8058702546888433E-4 0.0 0.0 26.694488429058715 0.0 25 2.8058702546888433E-4 0.0 0.0 27.252576022716326 0.0 26 4.6764504244814053E-4 0.0 0.0 27.803087766686275 0.0 27 4.6764504244814053E-4 0.0 0.0 28.485194825601134 0.0 28 4.6764504244814053E-4 0.0 0.0 29.045901231496455 0.0 29 4.6764504244814053E-4 0.0 0.0 29.66833678299493 0.0 30 4.6764504244814053E-4 0.0 0.0 30.431720550287274 0.0 31 4.6764504244814053E-4 0.0 0.0 31.024413877086047 0.0 32 4.6764504244814053E-4 0.0 0.0 31.554910413239217 0.0 33 4.6764504244814053E-4 9.35290084896281E-5 0.0 32.09195397998666 0.0 34 4.6764504244814053E-4 9.35290084896281E-5 0.0 32.65378273398386 0.0 35 4.6764504244814053E-4 9.35290084896281E-5 0.0 33.25339720741086 0.0 36 4.6764504244814053E-4 9.35290084896281E-5 0.0 33.79062783217529 0.0 37 5.611740509377687E-4 9.35290084896281E-5 0.0 34.348902483849876 0.0 38 5.611740509377687E-4 9.35290084896281E-5 0.0 34.96984157121252 0.0 39 5.611740509377687E-4 9.35290084896281E-5 0.0 35.89577875525984 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTGAT 20 7.0330664E-4 45.0 25 CGAATAT 85 0.0 45.0 14 GCGTACA 20 7.0330664E-4 45.0 2 GCTACGA 90 0.0 42.5 10 CGTTTTT 1615 0.0 41.23839 1 TACGGCT 1505 0.0 40.066444 7 GACGTAG 120 0.0 39.375004 1 GGTACGA 40 3.457917E-7 39.375 8 GCGTTAG 75 0.0 39.0 1 CGAGTAT 35 6.247881E-6 38.571426 27 TTGTACG 70 0.0 38.571426 1 CCGAGTA 35 6.247881E-6 38.571426 26 TACGGGA 310 0.0 38.46774 4 ACGGCTG 1570 0.0 38.407642 8 CTACGAA 100 0.0 38.250004 11 ACGTAGG 225 0.0 38.0 2 TTAGACG 30 1.13986855E-4 37.500004 1 CGTCTTA 30 1.13986855E-4 37.500004 17 CGCTCAT 30 1.13986855E-4 37.500004 21 CGCTATC 30 1.13986855E-4 37.500004 42 >>END_MODULE