SRR2936466.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936466.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1014251
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCAATGGGGTTCGTATGCCGTCTTCTGC	2784	0.27448826769704937	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2766	0.27271355906969774	No Hit
CCTGTCTCTTATACACATCTGACGCAATGGGGTTCGTATGCCGTCTTCTGC	2708	0.2669950534926759	No Hit
CTGTCTCTTATACACATCTGACGCAATGGGGTTCGTATGCCGTCTTCTGCT	2054	0.2025139733655673	Illumina Single End Adapter 1 (95% over 21bp)
TCTGTCTCTTATACACATCTGACGCAATGGGGTTCGTATGCCGTCTTCTGC	1263	0.12452538868583812	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	1262	0.12442679376209635	No Hit
CGCTGTCTCTTATACACATCTGACGCAATGGGGTTCGTATGCCGTCTTCTG	1087	0.10717268210728903	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGACGCA	25	3.8904793E-5	45.000004	14
CGATATA	25	3.8904793E-5	45.000004	33
TCGAAAG	25	3.8904793E-5	45.000004	1
TCGTTAG	20	7.032894E-4	45.0	1
TTTCGCG	20	7.032894E-4	45.0	1
TTATCCG	20	7.032894E-4	45.0	1
CTACGCG	20	7.032894E-4	45.0	1
ACTCGAT	20	7.032894E-4	45.0	19
TGTTACG	75	0.0	42.000004	1
ATTAACG	45	1.9279469E-8	40.0	1
CGGTATA	45	1.9279469E-8	40.0	7
CTTACGG	45	1.9279469E-8	40.0	2
CGTTTTT	1640	0.0	39.64939	1
GCGATAC	75	0.0	39.000004	9
CGACAGG	105	0.0	38.57143	2
TCGATAG	70	0.0	38.571426	1
ACGGGTC	100	0.0	38.250004	5
GCGATGT	160	0.0	37.96875	9
TAAACCG	30	1.1398273E-4	37.499996	1
CGAATCG	30	1.1398273E-4	37.499996	43