SRR2936465.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936465.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	735141
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGC	2215	0.30130274328326134	No Hit
GAATCTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCCGTCTTC	2005	0.27273679471013046	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCCG	1989	0.27056034148551095	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1667	0.2267592203400436	No Hit
GCTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCCGTCTTCTGC	1429	0.19438447862382863	No Hit
CCTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCCGTCTTCTGC	1264	0.17193980474494008	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	822	0.11181528441482655	No Hit
CTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCCGTCTTCTGCT	790	0.10746237796558755	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATACGT	20	7.031626E-4	45.0	3
CGCGACT	25	3.8894294E-5	45.0	14
CGTTAGG	50	2.1827873E-11	45.0	2
CGTGTTA	20	7.031626E-4	45.0	32
GCTCGAT	20	7.031626E-4	45.0	32
TGCGACG	30	2.16443E-6	44.999996	1
GCGACCT	115	0.0	41.08696	11
TACGAAT	95	0.0	40.263157	12
CGAATAT	95	0.0	40.263157	14
GCGATAA	45	1.9266736E-8	40.0	9
TCGATCA	80	0.0	39.375	17
CGTTTTT	1210	0.0	38.677685	1
GCGCGAC	105	0.0	38.571426	9
TTTGACG	35	6.2452164E-6	38.571426	1
GTACGAG	65	9.094947E-12	38.076927	1
TACGCGG	30	1.1395217E-4	37.499996	2
TATTCGG	30	1.1395217E-4	37.499996	2
TTCATCG	30	1.1395217E-4	37.499996	14
AACAGCG	60	1.546141E-10	37.499996	1
ACACGCG	235	0.0	37.340427	36