SRR2936461.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936461.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1105876
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTTCTGCTTCGTATGC	8700	0.786706647038185	No Hit
GAATCTGTCTCTTATACACATCTGACGCGTTCTGCTTCGTATGCCGTCTTC	8392	0.7588554232120057	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGTTCTGCTTCGTATGCCG	7852	0.710025355464808	No Hit
GCTGTCTCTTATACACATCTGACGCGTTCTGCTTCGTATGCCGTCTTCTGC	5296	0.47889636812807224	No Hit
CCTGTCTCTTATACACATCTGACGCGTTCTGCTTCGTATGCCGTCTTCTGC	3582	0.3239061160564114	No Hit
CTGTCTCTTATACACATCTGACGCGTTCTGCTTCGTATGCCGTCTTCTGCT	2296	0.2076182139769739	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2265	0.20481500638407923	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	1758	0.1589689983325436	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGTTCTGCTTCGTATGCCGTCT	1727	0.15616579073964892	No Hit
GAATGCTGTCTCTTATACACATCTGACGCGTTCTGCTTCGTATGCCGTCTT	1469	0.13283586948265447	No Hit
TCTGTCTCTTATACACATCTGACGCGTTCTGCTTCGTATGCCGTCTTCTGC	1462	0.1322028871229686	No Hit
GAACTGTCTCTTATACACATCTGACGCGTTCTGCTTCGTATGCCGTCTTCT	1392	0.1258730635261096	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGTTCTGCTTCGTATGCCGTC	1300	0.11755386679880926	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGTTCTGCTTCGTA	1226	0.11086233899641551	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGTTCTGCTT	1180	0.10670274063276533	No Hit
CGCTGTCTCTTATACACATCTGACGCGTTCTGCTTCGTATGCCGTCTTCTG	1107	0.10010163888175527	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAGGTCG	25	3.89071E-5	45.0	1
ATTACCG	20	7.033172E-4	45.0	1
ACCCGTT	35	1.2118653E-7	45.0	39
TATACGA	20	7.033172E-4	45.0	39
TCACGAC	105	0.0	38.57143	25
CCCGTTC	35	6.248074E-6	38.571426	40
TACGGCT	1125	0.0	38.4	7
CGTTTTT	1505	0.0	38.272423	1
GCAACGA	95	0.0	37.894737	11
GTACGAG	95	0.0	37.894737	1
TAGACGG	150	0.0	37.5	2
CGCATCG	60	1.5643309E-10	37.499996	21
TACGGAT	30	1.13989394E-4	37.499996	13
CGTAGTC	30	1.13989394E-4	37.499996	38
CGTAAGG	110	0.0	36.818184	2
TACGGGA	295	0.0	36.61017	4
AACGGGA	240	0.0	36.5625	4
TCGACGT	105	0.0	36.42857	26
GGTACGA	25	0.0021070743	36.0	8
ACACGCG	450	0.0	36.0	36