##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2936461.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1105876 Sequences flagged as poor quality 0 Sequence length 51 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.01789260278729 33.0 31.0 34.0 30.0 34.0 2 32.07171057152882 33.0 31.0 34.0 30.0 34.0 3 32.10034488495998 33.0 31.0 34.0 30.0 34.0 4 35.759543565463034 37.0 35.0 37.0 35.0 37.0 5 34.8375116197476 37.0 35.0 37.0 33.0 37.0 6 35.298807461234354 37.0 35.0 37.0 33.0 37.0 7 35.850768983140966 37.0 35.0 37.0 35.0 37.0 8 35.81735926993623 37.0 35.0 37.0 35.0 37.0 9 37.672023807370806 39.0 37.0 39.0 35.0 39.0 10 37.36744716405818 39.0 37.0 39.0 34.0 39.0 11 37.25235198159649 39.0 37.0 39.0 34.0 39.0 12 37.08727289497195 39.0 37.0 39.0 34.0 39.0 13 36.96551602530483 39.0 37.0 39.0 33.0 39.0 14 37.90636111101064 40.0 37.0 41.0 33.0 41.0 15 38.032614868213074 40.0 37.0 41.0 33.0 41.0 16 38.13857068966141 40.0 37.0 41.0 33.0 41.0 17 38.10882684857977 40.0 37.0 41.0 33.0 41.0 18 38.095412143857 40.0 37.0 41.0 34.0 41.0 19 38.056225110229356 40.0 37.0 41.0 34.0 41.0 20 38.004867634345985 40.0 36.0 41.0 33.0 41.0 21 37.93721176696121 40.0 36.0 41.0 33.0 41.0 22 38.01109256372324 40.0 36.0 41.0 34.0 41.0 23 38.000524471098025 40.0 36.0 41.0 34.0 41.0 24 37.95918258466591 40.0 36.0 41.0 34.0 41.0 25 37.8239902122842 40.0 36.0 41.0 33.0 41.0 26 37.8406873826722 40.0 36.0 41.0 34.0 41.0 27 37.81539973740275 40.0 36.0 41.0 34.0 41.0 28 37.72198148797876 40.0 36.0 41.0 33.0 41.0 29 37.66391620760375 40.0 36.0 41.0 33.0 41.0 30 37.506727698222946 40.0 35.0 41.0 33.0 41.0 31 37.48874105234221 40.0 35.0 41.0 33.0 41.0 32 37.43680032842742 40.0 35.0 41.0 33.0 41.0 33 37.3207683320734 40.0 35.0 41.0 33.0 41.0 34 37.230847762316934 40.0 35.0 41.0 32.0 41.0 35 37.12564971117919 40.0 35.0 41.0 32.0 41.0 36 37.0466734064217 39.0 35.0 41.0 32.0 41.0 37 36.9952164618818 39.0 35.0 41.0 31.0 41.0 38 36.941908496070084 39.0 35.0 41.0 31.0 41.0 39 36.89689802473333 39.0 35.0 41.0 31.0 41.0 40 36.748712333028294 39.0 35.0 41.0 31.0 41.0 41 36.57916529520489 39.0 35.0 41.0 31.0 41.0 42 36.66536121590486 39.0 35.0 41.0 31.0 41.0 43 36.56974470917174 39.0 35.0 41.0 31.0 41.0 44 36.47836556720645 39.0 35.0 41.0 31.0 41.0 45 36.43979614350976 39.0 35.0 41.0 31.0 41.0 46 36.313856164705626 39.0 35.0 41.0 31.0 41.0 47 36.17076055543298 38.0 35.0 40.0 30.0 41.0 48 36.11691184183398 38.0 35.0 40.0 30.0 41.0 49 36.106664761691185 38.0 35.0 40.0 30.0 41.0 50 35.98901052197534 38.0 35.0 40.0 30.0 41.0 51 34.76162969446846 37.0 34.0 40.0 26.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 2.0 8 8.0 9 26.0 10 29.0 11 18.0 12 22.0 13 26.0 14 28.0 15 36.0 16 82.0 17 139.0 18 284.0 19 585.0 20 970.0 21 1677.0 22 2544.0 23 3661.0 24 4702.0 25 6283.0 26 7875.0 27 9518.0 28 11432.0 29 13391.0 30 17012.0 31 21820.0 32 29273.0 33 42598.0 34 76823.0 35 89626.0 36 81276.0 37 122333.0 38 209117.0 39 352437.0 40 223.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.6004579175242 20.93950858866636 24.089047958360613 11.37098553544882 2 31.217695293143173 27.054299035334882 24.012909223095537 17.715096448426408 3 31.299982999902337 26.425385847961252 25.74963196597087 16.524999186165537 4 28.041841942496266 23.689183959141893 28.87159138999309 19.39738270836875 5 27.020208413963232 29.08644368808076 24.650051181145084 19.243296716810924 6 25.428890761712886 33.96845577623531 25.61733865279652 14.985314809255287 7 76.63978601579201 6.063247597379815 12.184187015542431 5.11277937128575 8 76.62848275936905 7.591357439712952 9.991355269487718 5.788804531430287 9 70.1931319605453 7.365021033099552 11.96372830226897 10.478118704086173 10 42.38205730118024 22.737901898585374 19.320249286538456 15.55979151369593 11 32.04066278678622 23.9298981079253 24.635673438975076 19.393765666313403 12 28.499849892754703 20.878290151879597 29.43883401032304 21.18302594504266 13 26.341199194123032 22.672614289486344 32.24240330742326 18.743783208967372 14 20.996838705243626 26.917122715385812 30.94189583642289 21.144142742947672 15 18.611218617638865 24.555103827192198 35.81983875226517 21.013838802903763 16 23.182345941136255 24.582593346812843 29.074778727452266 23.160281984598637 17 23.716583052711155 24.621295696805067 27.82192578553111 23.84019546495267 18 24.356166514148057 23.944908832454995 29.872336500656495 21.826588152740452 19 24.239245629708936 25.29949108218281 26.766020783523647 23.695242504584602 20 25.111676173458868 27.177007187062564 28.245752688366508 19.46556395111206 21 23.768668458308166 26.934574943302863 30.081039827250073 19.2157167711389 22 22.503065443141907 22.520155966853427 30.333780640867513 24.642997949137154 23 21.701257645522645 25.406193822815577 30.10961445948732 22.782934072174456 24 24.17450057691821 24.077835127989033 28.373886403177213 23.373777891915548 25 22.269766230571964 27.384806253142308 26.726052468812057 23.619375047473675 26 21.998216798266714 25.232214099953342 27.518546383138798 25.251022718641146 27 22.124541992049743 25.185915961644884 29.52329194231541 23.16625010398996 28 18.90293305940268 25.022335234691774 31.11054042225349 24.964191283652053 29 23.415283449500667 23.710524507268445 28.78206959912323 24.09212244410766 30 23.373777891915548 23.91814272124542 31.743341929836618 20.964737457002414 31 24.911382469643975 23.540885234872626 28.884251037186807 22.66348125829659 32 25.167469047162612 24.025568870289256 26.734281239487974 24.072680843060162 33 23.662869978189235 22.29481424680525 29.505749288346976 24.53656648665854 34 24.131367350408183 22.255388488401955 30.317503951618445 23.295740209571417 35 22.521150653418648 23.105755075614265 29.270098998441057 25.102995272526034 36 24.659455490488988 23.018765214183144 31.151051293273387 21.170728002054478 37 21.247318867576475 24.310049227942372 31.006007906853934 23.43662399762722 38 21.067913581631213 24.263389385428386 29.667250216118262 25.00144681682214 39 23.822019828624548 21.865109650629908 29.057688203740746 25.2551823170048 40 24.90152603004315 20.99276953293136 30.124173053760096 23.98153138326539 41 22.343373036398294 23.11597321942062 28.04690580137375 26.49374794280733 42 21.32906401802734 21.49146920631246 31.271227515562323 25.908239260097876 43 22.543757166264573 21.79991246758226 31.136130994795074 24.52019937135809 44 22.57594884055717 21.29415956219323 29.830288386763073 26.299603210486527 45 21.711385363277618 21.558565336439166 28.23444943194355 28.49559986833967 46 24.557454904528175 22.052291576994165 28.835149691285462 24.555103827192198 47 20.06599293229982 22.923456156024727 33.34578198640716 23.664768925268294 48 20.9947589060618 22.85165787122607 30.449616412690027 25.7039668100221 49 22.282154599611527 20.302547482719582 33.236276038181494 24.17902187948739 50 21.715725813744037 21.010583465053948 31.22709960248708 26.046591118714936 51 20.955513999761273 21.71238004984284 28.577345018790535 28.75476093160535 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 398.0 1 817.5 2 1237.0 3 2710.5 4 4184.0 5 2895.0 6 1606.0 7 1596.0 8 1586.0 9 1634.0 10 1682.0 11 1701.5 12 1721.0 13 1755.5 14 1790.0 15 1852.5 16 1915.0 17 1888.5 18 1862.0 19 2065.5 20 2269.0 21 2451.0 22 2633.0 23 3158.5 24 3684.0 25 4697.5 26 6404.5 27 7098.0 28 8275.5 29 9453.0 30 11973.5 31 14494.0 32 17365.5 33 20237.0 34 23208.5 35 26180.0 36 27655.0 37 29130.0 38 32370.5 39 35611.0 40 39878.5 41 44146.0 42 50132.5 43 56119.0 44 63780.0 45 71441.0 46 95989.0 47 120537.0 48 118553.0 49 116569.0 50 114661.5 51 112754.0 52 96331.0 53 79908.0 54 73705.0 55 67502.0 56 62506.0 57 57510.0 58 54329.5 59 51149.0 60 45722.0 61 40295.0 62 36141.0 63 31987.0 64 28771.5 65 25556.0 66 22031.0 67 18506.0 68 16081.0 69 13656.0 70 11670.0 71 9684.0 72 7911.5 73 6139.0 74 4788.5 75 2814.5 76 2191.0 77 1716.5 78 1242.0 79 908.5 80 575.0 81 387.0 82 199.0 83 207.0 84 215.0 85 125.5 86 36.0 87 26.5 88 17.0 89 12.5 90 8.0 91 7.0 92 6.0 93 5.0 94 4.0 95 3.5 96 3.0 97 2.0 98 1.0 99 1.5 100 2.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1105876.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 27.291362818370544 #Duplication Level Percentage of deduplicated Percentage of total 1 71.24360738295006 19.443351375776327 2 12.11369741174193 6.611986222716104 3 4.432035422732692 3.6286886023700458 4 2.188270236289799 2.388835078529054 5 1.3342288597434777 1.820646194700004 6 0.83806850314509 1.3723218951588823 7 0.6339891383653754 1.2111699318624911 8 0.47954127893246534 1.0469868023785074 9 0.39482163024706146 0.9697698323651789 >10 5.359683935807937 37.379853517201454 >50 0.8997461566683471 15.15052679245751 >100 0.07397906732569993 3.717578222727913 >500 0.0026659123360597407 0.5217541958505539 >1k 0.004332107546097079 1.9863401414627762 >5k 0.0013329561680298703 2.7501911944432194 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GAATGATACGGCTGTCTCTTATACACATCTGACGCGTTCTGCTTCGTATGC 8700 0.786706647038185 No Hit GAATCTGTCTCTTATACACATCTGACGCGTTCTGCTTCGTATGCCGTCTTC 8392 0.7588554232120057 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCGTTCTGCTTCGTATGCCG 7852 0.710025355464808 No Hit GCTGTCTCTTATACACATCTGACGCGTTCTGCTTCGTATGCCGTCTTCTGC 5296 0.47889636812807224 No Hit CCTGTCTCTTATACACATCTGACGCGTTCTGCTTCGTATGCCGTCTTCTGC 3582 0.3239061160564114 No Hit CTGTCTCTTATACACATCTGACGCGTTCTGCTTCGTATGCCGTCTTCTGCT 2296 0.2076182139769739 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2265 0.20481500638407923 No Hit GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG 1758 0.1589689983325436 No Hit GAATGACTGTCTCTTATACACATCTGACGCGTTCTGCTTCGTATGCCGTCT 1727 0.15616579073964892 No Hit GAATGCTGTCTCTTATACACATCTGACGCGTTCTGCTTCGTATGCCGTCTT 1469 0.13283586948265447 No Hit TCTGTCTCTTATACACATCTGACGCGTTCTGCTTCGTATGCCGTCTTCTGC 1462 0.1322028871229686 No Hit GAACTGTCTCTTATACACATCTGACGCGTTCTGCTTCGTATGCCGTCTTCT 1392 0.1258730635261096 No Hit GAATGATCTGTCTCTTATACACATCTGACGCGTTCTGCTTCGTATGCCGTC 1300 0.11755386679880926 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGTTCTGCTTCGTA 1226 0.11086233899641551 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGTTCTGCTT 1180 0.10670274063276533 No Hit CGCTGTCTCTTATACACATCTGACGCGTTCTGCTTCGTATGCCGTCTTCTG 1107 0.10010163888175527 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.8085210276739888E-4 0.0 0.0 0.22091084353037774 0.0 2 1.8085210276739888E-4 0.0 0.0 1.3256459132850338 0.0 3 1.8085210276739888E-4 0.0 0.0 1.8517446802353972 0.0 4 1.8085210276739888E-4 0.0 0.0 2.5714456231982608 0.0 5 1.8085210276739888E-4 0.0 0.0 4.877581211636747 0.0 6 1.8085210276739888E-4 0.0 0.0 5.923901052197534 0.0 7 1.8085210276739888E-4 0.0 0.0 6.9371249579518866 0.0 8 2.712781541510983E-4 0.0 0.0 8.20706842358456 0.0 9 2.712781541510983E-4 0.0 0.0 8.635235776886377 0.0 10 3.6170420553479775E-4 0.0 0.0 10.331538074793196 0.0 11 3.6170420553479775E-4 0.0 0.0 11.902419439430822 0.0 12 3.6170420553479775E-4 0.0 0.0 13.90526605152838 0.0 13 3.6170420553479775E-4 0.0 0.0 14.434168026071639 0.0 14 3.6170420553479775E-4 0.0 0.0 14.68962162123059 0.0 15 4.521302569184972E-4 0.0 0.0 15.205411818323212 0.0 16 5.425563083021966E-4 0.0 0.0 16.027746329606575 0.0 17 5.425563083021966E-4 0.0 0.0 16.90442689777154 0.0 18 5.425563083021966E-4 0.0 0.0 17.810586358687594 0.0 19 6.329823596858961E-4 0.0 0.0 18.528207502468632 0.0 20 6.329823596858961E-4 0.0 0.0 19.143285503980554 0.0 21 7.234084110695955E-4 0.0 0.0 19.86298644694342 0.0 22 7.234084110695955E-4 0.0 0.0 20.62735785928983 0.0 23 7.234084110695955E-4 0.0 0.0 21.324633141509537 0.0 24 7.234084110695955E-4 0.0 0.0 21.883104434855262 0.0 25 7.234084110695955E-4 0.0 0.0 22.397719093279896 0.0 26 7.234084110695955E-4 0.0 0.0 22.927254050182842 0.0 27 7.234084110695955E-4 0.0 0.0 23.501097772263797 0.0 28 8.13834462453295E-4 0.0 0.0 24.007574086063897 0.0 29 8.13834462453295E-4 0.0 0.0 24.53756117322376 0.0 30 8.13834462453295E-4 0.0 0.0 25.162405188285124 0.0 31 9.042605138369944E-4 0.0 0.0 25.681541149278942 0.0 32 9.042605138369944E-4 0.0 0.0 26.161884334229153 0.0 33 9.042605138369944E-4 0.0 0.0 26.68590330199769 0.0 34 9.042605138369944E-4 0.0 0.0 27.23759264148964 0.0 35 9.042605138369944E-4 0.0 0.0 27.798143734017195 0.0 36 9.946865652206939E-4 0.0 0.0 28.28834335856823 0.0 37 9.946865652206939E-4 0.0 0.0 28.787495162206252 0.0 38 9.946865652206939E-4 0.0 0.0 29.32616315029895 0.0 39 9.946865652206939E-4 0.0 0.0 30.080135566736235 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TAGGTCG 25 3.89071E-5 45.0 1 ATTACCG 20 7.033172E-4 45.0 1 ACCCGTT 35 1.2118653E-7 45.0 39 TATACGA 20 7.033172E-4 45.0 39 TCACGAC 105 0.0 38.57143 25 CCCGTTC 35 6.248074E-6 38.571426 40 TACGGCT 1125 0.0 38.4 7 CGTTTTT 1505 0.0 38.272423 1 GCAACGA 95 0.0 37.894737 11 GTACGAG 95 0.0 37.894737 1 TAGACGG 150 0.0 37.5 2 CGCATCG 60 1.5643309E-10 37.499996 21 TACGGAT 30 1.13989394E-4 37.499996 13 CGTAGTC 30 1.13989394E-4 37.499996 38 CGTAAGG 110 0.0 36.818184 2 TACGGGA 295 0.0 36.61017 4 AACGGGA 240 0.0 36.5625 4 TCGACGT 105 0.0 36.42857 26 GGTACGA 25 0.0021070743 36.0 8 ACACGCG 450 0.0 36.0 36 >>END_MODULE