SRR2936458.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936458.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	967514
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGC	12486	1.2905239614103776	No Hit
GAATCTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCGTCTTC	12155	1.2563125701540234	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCG	11389	1.1771405891801048	No Hit
GCTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCGTCTTCTGC	7515	0.776732946499999	No Hit
CCTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCGTCTTCTGC	4964	0.513067511167797	No Hit
CTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCGTCTTCTGCT	3226	0.3334318676525611	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCGTCT	2575	0.26614601959248135	No Hit
GAACTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCGTCTTCT	2311	0.23885959272940752	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2057	0.21260674264145016	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTTGTCCCTT	1986	0.20526834753812348	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTA	1895	0.19586279888456395	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCGTC	1800	0.18604381952095783	No Hit
TCTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCGTCTTCTGC	1672	0.1728140367994675	No Hit
TGTGCGGGGCAATGAGTTTGGCCACCTAAATAGTGTTGCATAAAATTATAT	1467	0.15162571290958063	No Hit
ACTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCGTCTTCTGC	1429	0.1476981211641382	No Hit
CGCTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCCGTCTTCTG	1218	0.12588965120918147	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1144	0.11824118307331988	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTTGTCCCTTCGTATGCC	1059	0.10945578048483018	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTATGCG	35	1.2116652E-7	45.000004	1
TACGGGT	45	3.8380676E-10	45.000004	4
TAACGAT	20	7.032731E-4	45.000004	22
GCGTTAC	20	7.032731E-4	45.000004	27
CGCCTAT	20	7.032731E-4	45.000004	3
ACGATAG	40	6.8139343E-9	45.000004	1
AACGATA	20	7.032731E-4	45.000004	23
ACGTAGT	20	7.032731E-4	45.000004	29
CGCAATA	20	7.032731E-4	45.000004	12
TAGGACG	40	6.8139343E-9	45.000004	1
GACTCGT	20	7.032731E-4	45.000004	15
AGCGATC	25	3.890346E-5	45.0	24
CGGGTAC	65	0.0	44.999996	6
TGCTACG	30	2.165145E-6	44.999996	1
ATAACGA	30	2.165145E-6	44.999996	44
TAGTGCG	60	0.0	44.999996	1
TCACGAC	60	3.6379788E-12	41.249996	25
AGTACGG	60	3.6379788E-12	41.249996	2
CCTAAAT	225	0.0	41.0	25
CATACGA	225	0.0	41.0	18