SRR2936457.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936457.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	775387
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCCTATAGCGTCGTATGC	31135	4.015414238309386	No Hit
GAATCTGTCTCTTATACACATCTGACGCCTATAGCGTCGTATGCCGTCTTC	29246	3.771793955792398	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCTATAGCGTCGTATGCCG	28385	3.6607526306218703	No Hit
GCTGTCTCTTATACACATCTGACGCCTATAGCGTCGTATGCCGTCTTCTGC	9037	1.165482526789848	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCTATAGCGTCGTATGCCGTCT	6421	0.8281026119860146	No Hit
GAACTGTCTCTTATACACATCTGACGCCTATAGCGTCGTATGCCGTCTTCT	5980	0.7712277868986712	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCTATAGCGTCGTA	5131	0.6617340760162345	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCTATAGCGTCGTATGCCGTC	4859	0.6266548188195056	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCTATAGCGT	4768	0.6149187438014824	No Hit
CCTGTCTCTTATACACATCTGACGCCTATAGCGTCGTATGCCGTCTTCTGC	2669	0.34421521124290194	No Hit
CTGTCTCTTATACACATCTGACGCCTATAGCGTCGTATGCCGTCTTCTGCT	2538	0.32732042193124206	No Hit
GAATGCTGTCTCTTATACACATCTGACGCCTATAGCGTCGTATGCCGTCTT	2007	0.2588384896832162	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1764	0.2274993003493739	No Hit
GAATGATACGGCCTGTCTCTTATACACATCTGACGCCTATAGCGTCGTATG	1529	0.19719185387425892	No Hit
TCTGTCTCTTATACACATCTGACGCCTATAGCGTCGTATGCCGTCTTCTGC	1483	0.19125933243657683	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCCTATAGCGTCGT	1298	0.16740027882850755	No Hit
GAATGATACGGCGCTGTCTCTTATACACATCTGACGCCTATAGCGTCGTAT	1251	0.16133878953348457	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCTATAGCGTCGTATGCC	1098	0.1416067073603246	No Hit
ACTGTCTCTTATACACATCTGACGCCTATAGCGTCGTATGCCGTCTTCTGC	1056	0.13619005735200615	No Hit
GAATGATACGGCGACCACCCTGTCTCTTATACACATCTGACGCCTATAGCG	993	0.1280650823395285	No Hit
CGCTGTCTCTTATACACATCTGACGCCTATAGCGTCGTATGCCGTCTTCTG	832	0.10730125730764122	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTATTA	20	7.031864E-4	45.000004	20
TAGCGCG	20	7.031864E-4	45.000004	1
ACGATTG	30	2.1645847E-6	45.000004	1
TTCCCGT	20	7.031864E-4	45.000004	29
CCCCGGA	20	7.031864E-4	45.000004	25
AGACCGA	35	1.2112469E-7	45.000004	44
GTCCGTC	20	7.031864E-4	45.000004	9
CGCAGCG	30	2.1645847E-6	45.000004	31
TGCTCGA	20	7.031864E-4	45.000004	16
TTACGCG	20	7.031864E-4	45.000004	1
TTACGAC	20	7.031864E-4	45.000004	19
ACCGTAT	20	7.031864E-4	45.000004	18
CACCGTA	20	7.031864E-4	45.000004	17
CGGTACC	40	6.8102963E-9	45.000004	14
CCCGGTA	40	6.8102963E-9	45.000004	12
CCCGGAG	20	7.031864E-4	45.000004	26
GCGTAAG	20	7.031864E-4	45.000004	1
GCATCGA	20	7.031864E-4	45.000004	9
CTTACCG	20	7.031864E-4	45.000004	1
AACGTAG	45	3.8380676E-10	45.0	1

Summary

Basic Statistics

Per base sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content