SRR2936454.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936454.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	878355
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGCCGTCTTCTGC	4209	0.47919121539696363	No Hit
CCTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGCCGTCTTCTGC	2915	0.33187037131911357	No Hit
CTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGCCGTCTTCTGCT	2304	0.2623085199036836	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1489	0.16952143495511496	No Hit
TCTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGCCGTCTTCTGC	1476	0.1680413955632973	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	1144	0.130243466479954	No Hit
ACTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGCCGTCTTCTGC	1013	0.11532922337779143	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGCC	936	0.10656283621087147	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTATGCG	20	7.0323766E-4	45.000004	1
GCCCAAT	20	7.0323766E-4	45.000004	45
ATTGTCG	40	6.8121153E-9	45.000004	1
AAGCGTA	20	7.0323766E-4	45.000004	32
AGGCGAA	20	7.0323766E-4	45.000004	11
ATCCCGC	20	7.0323766E-4	45.000004	23
ACTACGC	20	7.0323766E-4	45.000004	45
TTACGTT	20	7.0323766E-4	45.000004	24
CCGAATC	20	7.0323766E-4	45.000004	25
CGCATCG	25	3.8900525E-5	45.0	21
GCGTTTA	25	3.8900525E-5	45.0	32
CGAATCG	25	3.8900525E-5	45.0	36
GCGATAT	70	0.0	41.785713	9
CGGTCTA	70	0.0	41.785713	31
GTCGGTA	70	0.0	41.785713	10
CGTATGG	135	0.0	41.666664	2
ATAACGC	60	3.6379788E-12	41.249996	11
GCTACGA	55	6.002665E-11	40.909092	10
AACGGGC	155	0.0	40.645164	4
TTACGGG	155	0.0	40.645164	3