SRR2936453.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936453.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	391123
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCGCTGTCTTTCGTATGCCGTCTTCTGC	3336	0.8529286183630214	TruSeq Adapter, Index 16 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCGCTGTCTTTCGTATGCCGTCTTCTGC	2582	0.6601503874740172	TruSeq Adapter, Index 16 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCGCTGTCTTTCGTATGCCGTCTTCTGCT	1874	0.4791331627135198	TruSeq Adapter, Index 13 (95% over 22bp)
TCTGTCTCTTATACACATCTGACGCGCTGTCTTTCGTATGCCGTCTTCTGC	1275	0.3259844089966583	TruSeq Adapter, Index 16 (95% over 21bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	910	0.23266338210741888	No Hit
ACTGTCTCTTATACACATCTGACGCGCTGTCTTTCGTATGCCGTCTTCTGC	812	0.20760732557277378	TruSeq Adapter, Index 13 (95% over 21bp)
GAATGATACGGCTGTCTCTTATACACATCTGACGCGCTGTCTTTCGTATGC	730	0.1866420537784789	No Hit
GAATCTGTCTCTTATACACATCTGACGCGCTGTCTTTCGTATGCCGTCTTC	633	0.16184167129010565	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGCTGTCTTTCGTATGCCG	631	0.1613303231975619	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	618	0.15800656059602733	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGCTGTCTTTCGTATGCC	534	0.13652994070918867	No Hit
ACCTGTCTCTTATACACATCTGACGCGCTGTCTTTCGTATGCCGTCTTCTG	509	0.13013808955239145	No Hit
GCCTGTCTCTTATACACATCTGACGCGCTGTCTTTCGTATGCCGTCTTCTG	490	0.12528028267322555	No Hit
CGCTGTCTCTTATACACATCTGACGCGCTGTCTTTCGTATGCCGTCTTCTG	466	0.11914410556270022	No Hit
AGCTGTCTCTTATACACATCTGACGCGCTGTCTTTCGTATGCCGTCTTCTG	429	0.10968416585064034	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGCGTTA	20	7.027572E-4	45.000004	39
TATCACC	20	7.027572E-4	45.000004	14
CCGGGAT	20	7.027572E-4	45.000004	5
GCGGTAA	20	7.027572E-4	45.000004	25
GGGTCGA	20	7.027572E-4	45.000004	17
ATGTGCG	20	7.027572E-4	45.000004	12
GAGTACG	20	7.027572E-4	45.000004	1
GCTATCG	20	7.027572E-4	45.000004	28
CGATTAT	20	7.027572E-4	45.000004	10
GCGTTAG	20	7.027572E-4	45.000004	1
TAGCCCA	20	7.027572E-4	45.000004	14
ATCCGTC	20	7.027572E-4	45.000004	28
AACGGTC	20	7.027572E-4	45.000004	2
CGTTAAC	20	7.027572E-4	45.000004	41
CCCGTTG	20	7.027572E-4	45.000004	12
AAACGCC	20	7.027572E-4	45.000004	12
ACAGCCC	20	7.027572E-4	45.000004	28
CGGGATC	40	6.7957444E-9	45.000004	6
AACGAGT	20	7.027572E-4	45.000004	30
CTCGCGA	20	7.027572E-4	45.000004	15