SRR2936452.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936452.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	853603
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCGACATCACTCGTATGC	9046	1.0597432295809646	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGACATCACTCGTATGCCG	8152	0.9550107016962218	No Hit
GAATCTGTCTCTTATACACATCTGACGCGACATCACTCGTATGCCGTCTTC	6998	0.8198190493707261	No Hit
GCTGTCTCTTATACACATCTGACGCGACATCACTCGTATGCCGTCTTCTGC	4360	0.5107760867757025	No Hit
CCTGTCTCTTATACACATCTGACGCGACATCACTCGTATGCCGTCTTCTGC	3302	0.38683088039756186	No Hit
CTGTCTCTTATACACATCTGACGCGACATCACTCGTATGCCGTCTTCTGCT	1746	0.20454473566751757	TruSeq Adapter, Index 13 (95% over 22bp)
GAATGACTGTCTCTTATACACATCTGACGCGACATCACTCGTATGCCGTCT	1599	0.18732361531063035	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1438	0.1684623882530872	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGACATCACT	1335	0.15639588895540432	No Hit
GAACTGTCTCTTATACACATCTGACGCGACATCACTCGTATGCCGTCTTCT	1231	0.14421223917910317	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGACATCACTCGTA	1138	0.13331724466760309	No Hit
GAATGCTGTCTCTTATACACATCTGACGCGACATCACTCGTATGCCGTCTT	1124	0.13167713796694716	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGACATCACTCGTATGCCGTC	1078	0.12628821595050627	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGACATCACTCGTATGCC	1070	0.12535101212156002	No Hit
GTAGCAGGGAAGGACTTTTTTTTTATTTCTTCCCAAATAAGTGTTGACAGC	1039	0.12171934728439333	No Hit
TCTGTCTCTTATACACATCTGACGCGACATCACTCGTATGCCGTCTTCTGC	1000	0.1171504786182804	No Hit
CGCTGTCTCTTATACACATCTGACGCGACATCACTCGTATGCCGTCTTCTG	987	0.11562752239624274	No Hit

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTTCGCG	30	2.164843E-6	45.000004	1
ATCTCGC	40	6.8121153E-9	45.0	31
CATCTCG	25	3.889959E-5	45.0	30
CCGCTAT	20	7.032265E-4	45.0	43
CGTTCCT	20	7.032265E-4	45.0	29
TTATCCG	20	7.032265E-4	45.0	39
GTTCGGT	20	7.032265E-4	45.0	14
TCTCGCG	20	7.032265E-4	45.0	31
CGAATTG	20	7.032265E-4	45.0	14
ACGTCGT	20	7.032265E-4	45.0	39
TGTCGTC	20	7.032265E-4	45.0	17
TATCGAG	20	7.032265E-4	45.0	1
GCCCGTA	25	3.889959E-5	45.0	28
TCGAACG	25	3.889959E-5	45.0	1
TACGTAG	25	3.889959E-5	45.0	1
CCCGATA	25	3.889959E-5	45.0	11
ACGGTAA	20	7.032265E-4	45.0	11
CGTAAGG	155	0.0	42.09677	2
CGAACGG	70	0.0	41.785713	2
TTAGCGG	130	0.0	41.538464	2