SRR2936451.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936451.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	480426
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGGTAGACTCGTATGC	6272	1.3055080282915579	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGGTAGACTCGTATGCCG	5499	1.1446091593710583	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGGTAGACTCGTATGCCGTCTTC	4617	0.9610220928925578	No Hit
GCTGTCTCTTATACACATCTGACGCAGGTAGACTCGTATGCCGTCTTCTGC	3351	0.6975059634574315	TruSeq Adapter, Index 15 (95% over 22bp)
CCTGTCTCTTATACACATCTGACGCAGGTAGACTCGTATGCCGTCTTCTGC	2026	0.421709066536782	TruSeq Adapter, Index 15 (95% over 22bp)
CTGTCTCTTATACACATCTGACGCAGGTAGACTCGTATGCCGTCTTCTGCT	1635	0.3403229633700091	Illumina Single End Adapter 1 (95% over 21bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1151	0.23957904026842844	No Hit
GAATGACTGTCTCTTATACACATCTGACGCAGGTAGACTCGTATGCCGTCT	1136	0.23645681124668522	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAGGTAGACT	1084	0.22563308397130882	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAGGTAGACTCGTA	948	0.19732487417417044	No Hit
TCTGTCTCTTATACACATCTGACGCAGGTAGACTCGTATGCCGTCTTCTGC	819	0.1704737045871789	TruSeq Adapter, Index 15 (95% over 22bp)
GAACTGTCTCTTATACACATCTGACGCAGGTAGACTCGTATGCCGTCTTCT	752	0.15652774829005925	No Hit
GAAGAAGGAGAGGAATACTAAATTAAATGTCACAAGGTGCTGCTTCCACAG	662	0.13779437415960002	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCAGGTAGACTCGTATGCCGTC	655	0.1363373339494532	No Hit
ACTGTCTCTTATACACATCTGACGCAGGTAGACTCGTATGCCGTCTTCTGC	556	0.11573062240594804	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGGTAGACTCGTATGCC	509	0.10594763813781935	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGAC	20	7.029181E-4	45.000004	25
CTGCTAT	20	7.029181E-4	45.000004	41
GAATGCG	20	7.029181E-4	45.000004	1
CAACGCC	20	7.029181E-4	45.000004	14
ACGCAAC	20	7.029181E-4	45.000004	22
GTTTACG	20	7.029181E-4	45.000004	1
GCAACGA	20	7.029181E-4	45.000004	11
ACACCCG	20	7.029181E-4	45.000004	10
ATCAGTC	20	7.029181E-4	45.000004	6
ATTCGAC	20	7.029181E-4	45.000004	13
TGACGTA	20	7.029181E-4	45.000004	26
CGTTCGA	20	7.029181E-4	45.000004	21
CCGCTAT	20	7.029181E-4	45.000004	26
ACCTAGC	20	7.029181E-4	45.000004	36
TTGACGA	20	7.029181E-4	45.000004	22
CGGTCTA	20	7.029181E-4	45.000004	31
GACGCAA	20	7.029181E-4	45.000004	21
AGTAGGC	20	7.029181E-4	45.000004	41
GTAAGCA	20	7.029181E-4	45.000004	29
CGGTAAC	20	7.029181E-4	45.000004	6