SRR2936448.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936448.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	643498
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCCGTCCTAATCGTATGCCGTCTTCTGC	3447	0.53566600051593	No Hit
CCTGTCTCTTATACACATCTGACGCCGTCCTAATCGTATGCCGTCTTCTGC	2785	0.43279077790451564	No Hit
CTGTCTCTTATACACATCTGACGCCGTCCTAATCGTATGCCGTCTTCTGCT	1934	0.3005448346381807	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1329	0.20652744841475806	No Hit
TCTGTCTCTTATACACATCTGACGCCGTCCTAATCGTATGCCGTCTTCTGC	1304	0.20264243245511254	No Hit
ACTGTCTCTTATACACATCTGACGCCGTCCTAATCGTATGCCGTCTTCTGC	951	0.14778600710491718	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCGTCCTAATCGTATGCC	718	0.11157765836102054	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTATGT	20	7.030969E-4	45.0	21
ATAGCCG	20	7.030969E-4	45.0	1
CCGGACT	20	7.030969E-4	45.0	33
GCACGAC	20	7.030969E-4	45.0	3
GCACCGT	20	7.030969E-4	45.0	9
CCCGTAT	20	7.030969E-4	45.0	12
CCATCGG	20	7.030969E-4	45.0	26
TGCGATA	20	7.030969E-4	45.0	43
GCTTACG	20	7.030969E-4	45.0	1
GTTCCGC	20	7.030969E-4	45.0	30
TTACGCG	20	7.030969E-4	45.0	1
ATACGTC	20	7.030969E-4	45.0	8
CGCAAAC	20	7.030969E-4	45.0	30
CTTACGG	20	7.030969E-4	45.0	2
GGCTACG	20	7.030969E-4	45.0	1
TCCGCAA	25	3.8888862E-5	44.999996	28
TAAACGG	30	2.1640062E-6	44.999996	2
TTGTACG	25	3.8888862E-5	44.999996	1
TCGATAG	25	3.8888862E-5	44.999996	1
GTTAACG	25	3.8888862E-5	44.999996	1