SRR2936446.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936446.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	899934
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCGCCTGTTTTCGTATGCCGTCTTCTGC	6098	0.6776052466069734	TruSeq Adapter, Index 20 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCGCCTGTTTTCGTATGCCGTCTTCTGC	4812	0.534705878431085	TruSeq Adapter, Index 20 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCGCCTGTTTTCGTATGCCGTCTTCTGCT	3891	0.43236504010294086	TruSeq Adapter, Index 22 (95% over 23bp)
TCTGTCTCTTATACACATCTGACGCGCCTGTTTTCGTATGCCGTCTTCTGC	2766	0.30735587276400267	TruSeq Adapter, Index 20 (95% over 21bp)
ACTGTCTCTTATACACATCTGACGCGCCTGTTTTCGTATGCCGTCTTCTGC	1685	0.1872359528587652	TruSeq Adapter, Index 22 (95% over 22bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGCCTGTTTTCGTATGCC	1233	0.13701004740347625	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1219	0.13545437776548058	No Hit
AGCTGTCTCTTATACACATCTGACGCGCCTGTTTTCGTATGCCGTCTTCTG	1080	0.12000880064538066	TruSeq Adapter, Index 22 (95% over 21bp)
CGCTGTCTCTTATACACATCTGACGCGCCTGTTTTCGTATGCCGTCTTCTG	1055	0.11723081914895982	TruSeq Adapter, Index 22 (95% over 21bp)
ACCTGTCTCTTATACACATCTGACGCGCCTGTTTTCGTATGCCGTCTTCTG	951	0.10567441612384908	TruSeq Adapter, Index 22 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTGGCCG	35	1.2115379E-7	45.000004	1
TCTAGCG	30	2.164974E-6	45.000004	1
TACGAAG	35	1.2115379E-7	45.000004	1
TCCACGG	35	1.2115379E-7	45.000004	2
TTACGAG	35	1.2115379E-7	45.000004	1
ATCGCGG	35	1.2115379E-7	45.000004	2
TTGATCG	25	3.8901286E-5	45.0	20
AGACTCG	20	7.0324703E-4	45.0	33
TCCGCCG	25	3.8901286E-5	45.0	16
ATCGTAA	25	3.8901286E-5	45.0	23
TACGACG	20	7.0324703E-4	45.0	1
AACTGCG	20	7.0324703E-4	45.0	1
ACGTCCG	20	7.0324703E-4	45.0	1
TACTACG	20	7.0324703E-4	45.0	1
CCGAAAC	20	7.0324703E-4	45.0	10
GGCGCGA	20	7.0324703E-4	45.0	8
ATACGAG	20	7.0324703E-4	45.0	1
GCGCTTT	20	7.0324703E-4	45.0	16
CGGTACT	20	7.0324703E-4	45.0	37
TTCGACG	20	7.0324703E-4	45.0	25