SRR2936444.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936444.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	658670
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCAGAATCGGTCGTATGCCGTCTTCTGC	2443	0.370898932697709	No Hit
CCTGTCTCTTATACACATCTGACGCAGAATCGGTCGTATGCCGTCTTCTGC	2119	0.3217088982343207	No Hit
CTGTCTCTTATACACATCTGACGCAGAATCGGTCGTATGCCGTCTTCTGCT	1701	0.25824768093278877	Illumina Single End Adapter 1 (95% over 21bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1386	0.21042403631560566	No Hit
GGGGAAGGGGAAGAAGATTGATCAAACTGAATGAAACACACACACACACAC	860	0.13056614085961105	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGAATCGGTCGTATGCC	783	0.11887591661985517	No Hit
TCTGTCTCTTATACACATCTGACGCAGAATCGGTCGTATGCCGTCTTCTGC	706	0.10718569238009928	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGGTAT	70	0.0	45.000004	6
ATAACGG	35	1.2108649E-7	45.000004	2
CGAACTC	20	7.031091E-4	45.0	13
TTTACGG	45	3.8380676E-10	45.0	2
TTGCTCG	25	3.888985E-5	45.0	1
GCGATAT	40	6.8066583E-9	45.0	9
TCCCGCT	20	7.031091E-4	45.0	38
TCATCCG	20	7.031091E-4	45.0	25
CGTCCGG	25	3.888985E-5	45.0	2
TTACCGG	40	6.8066583E-9	45.0	2
TATCGTA	20	7.031091E-4	45.0	28
TTCTCGT	25	3.888985E-5	45.0	19
TACGGGT	70	0.0	41.785717	4
TTGCGAG	55	6.002665E-11	40.909092	1
GGCGATA	205	0.0	40.609756	8
CGTTCAT	50	1.0804797E-9	40.5	17
CCTCATA	50	1.0804797E-9	40.5	18
TACACGG	50	1.0804797E-9	40.5	2
TAGTAGT	95	0.0	40.26316	21
GACACGT	45	1.9261279E-8	40.0	9