SRR2936443.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936443.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	414194
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCGGTAGGAATCGTATGC	4633	1.1185579704196584	No Hit
GCTGTCTCTTATACACATCTGACGCGGTAGGAATCGTATGCCGTCTTCTGC	3960	0.9560737239071547	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGGTAGGAATCGTATGCCG	3940	0.9512450687359064	No Hit
CCTGTCTCTTATACACATCTGACGCGGTAGGAATCGTATGCCGTCTTCTGC	3759	0.9075457394361096	No Hit
GAATCTGTCTCTTATACACATCTGACGCGGTAGGAATCGTATGCCGTCTTC	3694	0.8918526101295529	No Hit
CTGTCTCTTATACACATCTGACGCGGTAGGAATCGTATGCCGTCTTCTGCT	2169	0.5236676533218733	No Hit
TCTGTCTCTTATACACATCTGACGCGGTAGGAATCGTATGCCGTCTTCTGC	1145	0.2764405085539626	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1111	0.2682317947628406	No Hit
ACTGTCTCTTATACACATCTGACGCGGTAGGAATCGTATGCCGTCTTCTGC	944	0.22791252408291768	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGGTAGGAATCGTATGCCGTCT	938	0.2264639275315432	No Hit
GAACTGTCTCTTATACACATCTGACGCGGTAGGAATCGTATGCCGTCTTCT	796	0.1921804758156806	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGGTAGGAATCGTATGCC	715	0.17262442237212514	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGGTAGGAATCGTA	704	0.1699686620279386	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGGTAGGAAT	695	0.16779576720087688	No Hit
CGCTGTCTCTTATACACATCTGACGCGGTAGGAATCGTATGCCGTCTTCTG	639	0.15427553272138178	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGGTAGGAATCGTATGCCGTC	603	0.14558395341313493	No Hit
ACCTGTCTCTTATACACATCTGACGCGGTAGGAATCGTATGCCGTCTTCTG	486	0.11733632066133261	No Hit
AGCTGTCTCTTATACACATCTGACGCGGTAGGAATCGTATGCCGTCTTCTG	457	0.11033477066302265	No Hit
AAGCAGAGGTGATGTTTTGTTTTAGATGTTTTCCTGAATAATCTGTAATAT	451	0.10888617411164815	No Hit
GCCTGTCTCTTATACACATCTGACGCGGTAGGAATCGTATGCCGTCTTCTG	438	0.1057475482503368	No Hit
GGCTGTCTCTTATACACATCTGACGCGGTAGGAATCGTATGCCGTCTTCTG	432	0.10429895169896232	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGGTATG	20	7.028054E-4	45.000004	1
CGGCGCA	20	7.028054E-4	45.000004	22
CGAACTG	20	7.028054E-4	45.000004	11
CTCGTAG	25	3.8864688E-5	45.000004	1
GTCGACG	45	3.8380676E-10	45.000004	1
GGGCTAA	30	2.1621254E-6	45.000004	7
GTTTCGT	60	0.0	45.000004	10
TTTACGG	20	7.028054E-4	45.000004	2
CGAAAGG	50	2.1827873E-11	45.000004	2
CACGGCG	20	7.028054E-4	45.000004	2
TTGCTCG	25	3.8864688E-5	45.000004	1
GTCTAGA	20	7.028054E-4	45.000004	39
CGATTGA	20	7.028054E-4	45.000004	10
CACGAGG	50	2.1827873E-11	45.000004	2
TCGATTG	35	1.2094097E-7	45.000004	1
CGTTCTA	25	3.8864688E-5	45.000004	41
GCGTTAG	35	1.2094097E-7	45.000004	1
AGACGAC	35	1.2094097E-7	45.000004	38
ACGATAG	25	3.8864688E-5	45.000004	1
CGCTCAC	25	3.8864688E-5	45.000004	19

Summary

Basic Statistics

Per base sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content