##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2936442.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 512850 Sequences flagged as poor quality 0 Sequence length 51 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.977901920639564 33.0 31.0 34.0 30.0 34.0 2 32.022335965681975 33.0 31.0 34.0 30.0 34.0 3 32.057611387345226 33.0 31.0 34.0 30.0 34.0 4 35.724229306814856 37.0 35.0 37.0 33.0 37.0 5 34.79309934678756 37.0 35.0 37.0 33.0 37.0 6 35.249685093107146 37.0 35.0 37.0 33.0 37.0 7 35.77925709271717 37.0 35.0 37.0 35.0 37.0 8 35.75217899970752 37.0 35.0 37.0 35.0 37.0 9 37.58574046992298 39.0 37.0 39.0 35.0 39.0 10 37.285065808716 39.0 37.0 39.0 34.0 39.0 11 37.18539923954373 39.0 37.0 39.0 34.0 39.0 12 37.031884566637416 39.0 37.0 39.0 33.0 39.0 13 36.87976406356635 39.0 35.0 39.0 33.0 39.0 14 37.79082772740568 40.0 37.0 41.0 33.0 41.0 15 37.92442234571512 40.0 37.0 41.0 33.0 41.0 16 38.04114263429853 40.0 37.0 41.0 33.0 41.0 17 38.021569659744564 40.0 36.0 41.0 33.0 41.0 18 38.0393487374476 40.0 37.0 41.0 33.0 41.0 19 37.980721458516136 40.0 36.0 41.0 33.0 41.0 20 37.8931051964512 40.0 36.0 41.0 33.0 41.0 21 37.831227454421374 40.0 36.0 41.0 33.0 41.0 22 37.896638393292385 40.0 36.0 41.0 33.0 41.0 23 37.90795164278054 40.0 36.0 41.0 34.0 41.0 24 37.87552695719996 40.0 36.0 41.0 33.0 41.0 25 37.71552500731208 40.0 36.0 41.0 33.0 41.0 26 37.71836209417958 40.0 36.0 41.0 33.0 41.0 27 37.698085210100416 40.0 36.0 41.0 33.0 41.0 28 37.56181144584186 40.0 35.0 41.0 33.0 41.0 29 37.50656332260895 40.0 35.0 41.0 33.0 41.0 30 37.40581846543824 40.0 35.0 41.0 33.0 41.0 31 37.39732085405089 40.0 35.0 41.0 33.0 41.0 32 37.29501413668714 40.0 35.0 41.0 33.0 41.0 33 37.16794384322901 39.0 35.0 41.0 32.0 41.0 34 37.06173540021449 39.0 35.0 41.0 32.0 41.0 35 36.994146436579896 39.0 35.0 41.0 31.0 41.0 36 36.92675441162133 39.0 35.0 41.0 31.0 41.0 37 36.88689285366092 39.0 35.0 41.0 31.0 41.0 38 36.801869942478305 39.0 35.0 41.0 31.0 41.0 39 36.66471482889734 39.0 35.0 41.0 31.0 41.0 40 36.4939670468948 39.0 35.0 41.0 30.0 41.0 41 36.31530466998148 39.0 35.0 41.0 30.0 41.0 42 36.3946300087745 39.0 35.0 41.0 30.0 41.0 43 36.33012576776835 39.0 35.0 41.0 30.0 41.0 44 36.27138149556401 39.0 35.0 41.0 30.0 41.0 45 36.265845763868576 39.0 35.0 40.0 30.0 41.0 46 36.12431120210588 38.0 35.0 40.0 30.0 41.0 47 35.945845763868576 38.0 35.0 40.0 30.0 41.0 48 35.86909622696695 38.0 35.0 40.0 29.0 41.0 49 35.847752754216636 38.0 35.0 40.0 29.0 41.0 50 35.71728380618114 38.0 35.0 40.0 29.0 41.0 51 34.43437067368626 36.0 33.0 40.0 25.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 5.0 9 13.0 10 14.0 11 17.0 12 8.0 13 12.0 14 11.0 15 25.0 16 60.0 17 77.0 18 133.0 19 257.0 20 576.0 21 1016.0 22 1429.0 23 1992.0 24 2665.0 25 3312.0 26 4000.0 27 4754.0 28 5474.0 29 6571.0 30 8292.0 31 10835.0 32 14282.0 33 20662.0 34 35953.0 35 40968.0 36 38520.0 37 58339.0 38 96856.0 39 155650.0 40 72.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 45.09681193331384 20.382957979916156 23.200155991030517 11.320074095739495 2 31.0944720678561 28.003509798186606 23.559520327581165 17.342497806376134 3 30.504630983718435 27.728965584478892 25.37311104611485 16.393292385687825 4 28.00253485424588 23.944038217802476 29.273276786584773 18.78015014136687 5 27.013941698352344 29.1477040070196 24.29072828312372 19.547626011504338 6 25.0853075948133 35.08920737057619 24.922491956712488 14.902993077898023 7 75.8720873549771 6.164570537194111 12.831627181437067 5.131714926391733 8 75.97367651360047 8.301257677683534 9.63186116798284 6.093204640733158 9 69.5012186799259 7.5207175587403725 11.844203958272399 11.133859803061325 10 42.2217022521205 23.204250755581555 19.55484059666569 15.019206395632251 11 32.46446329336063 24.321536511650578 24.35195476260115 18.86204543238764 12 28.38373793506873 20.269669494004095 29.7525592278444 21.59403334308277 13 26.708589256117772 21.993370381203082 32.31607682558253 18.981963537096615 14 20.990543043774984 27.444086964999514 30.724773325533782 20.840596665691724 15 18.826362484157162 24.20239836209418 36.541678853465925 20.429560300282734 16 22.98293848103734 24.56098274349225 29.106756361509213 23.349322413961197 17 23.72311592083455 24.54967339377986 27.58389392609925 24.14331675928634 18 24.3464950765331 23.853953397679632 29.23408404016769 22.56546748561958 19 24.066881154333625 25.789997075168174 27.001267427122936 23.141854343375257 20 24.23769133274837 27.352442234571512 28.276104124012868 20.13376230866725 21 23.97328653602418 27.114945890611292 30.022423710636637 18.88934386272789 22 21.86721263527347 23.13366481427318 30.518865165252997 24.480257385200353 23 21.974651457541192 25.425173052549475 29.85668324071366 22.743492249195672 24 23.205420688310422 24.516135322218975 28.00818952910208 24.27025446036853 25 22.212537779077703 28.4490591790972 25.742419810860877 23.595983230964222 26 20.117968216827535 25.37447596763186 27.328068636053427 27.17948717948718 27 22.56546748561958 25.12411036365409 27.216340060446527 25.094082090279805 28 19.306814858145657 25.01745149653895 29.367261382470506 26.308472262844884 29 21.63810080920347 23.842644047967244 28.07526567222385 26.443989470605437 30 22.65672223847129 24.06376133372331 28.26908452763966 25.01043190016574 31 24.00370478697475 23.42185824315102 26.046797309154723 26.527639660719508 32 24.151116310812128 24.527249683143218 27.46066101199181 23.860972994052844 33 23.338598030613237 23.10032173150044 28.065126255240326 25.495953982645997 34 23.05742419810861 22.90338305547431 29.26235741444867 24.77683533196841 35 21.33976796334211 23.610412401286926 29.535731695427515 25.51408793994345 36 22.512625524032366 25.107341327873645 26.983913424978063 25.396119723115923 37 21.27698157355952 25.307399824510092 28.942965779467684 24.47265282246271 38 21.354977088817392 24.902408111533585 27.99590523544896 25.74670956420006 39 23.42068831042215 23.247148288973385 28.854635858438137 24.477527542166325 40 23.591693477625036 21.938968509310712 31.515842839036758 22.953495174027495 41 21.542166325436288 24.429170322706444 27.408793994345327 26.619869357511945 42 20.829092327191187 23.460856000779955 31.233889051379542 24.476162620649315 43 22.004484742127328 23.92453933898801 28.701959637320858 25.369016281563812 44 22.06863605342693 22.310812128302622 29.036365408988985 26.584186409281468 45 20.80354879594423 21.588378668226575 28.641903090572292 28.966169445256895 46 24.151701277176564 22.94472067856098 28.020668811543338 24.88290923271912 47 19.800331480939846 22.821877742029834 32.84274154236132 24.535049234669007 48 20.813493224139613 23.937213610217412 29.57433947548016 25.674953690162816 49 22.03802281368821 21.494004094764552 31.992785414838647 24.47518767670859 50 21.496733937798577 21.92083455201326 30.492736667641612 26.08969484254655 51 20.67602612849761 22.482207273081798 27.743979721166035 29.097786877254556 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 171.0 1 359.0 2 547.0 3 1181.5 4 1816.0 5 1267.0 6 718.0 7 743.5 8 769.0 9 774.5 10 780.0 11 788.0 12 796.0 13 831.0 14 866.0 15 848.0 16 830.0 17 842.5 18 855.0 19 1027.5 20 1200.0 21 1327.0 22 1454.0 23 1549.0 24 1644.0 25 1874.5 26 2648.5 27 3192.0 28 3916.5 29 4641.0 30 5616.0 31 6591.0 32 8007.5 33 9424.0 34 10413.0 35 11402.0 36 13087.5 37 14773.0 38 15755.0 39 16737.0 40 18722.5 41 20708.0 42 23630.5 43 26553.0 44 28801.5 45 31050.0 46 45019.5 47 58989.0 48 55318.0 49 51647.0 50 50941.0 51 50235.0 52 43320.5 53 36406.0 54 32851.0 55 29296.0 56 27876.0 57 26456.0 58 25704.0 59 24952.0 60 22443.5 61 19935.0 62 18042.5 63 16150.0 64 14343.5 65 12537.0 66 10898.5 67 9260.0 68 7771.0 69 6282.0 70 5427.0 71 4572.0 72 3672.0 73 2772.0 74 2263.0 75 1402.5 76 1051.0 77 785.0 78 519.0 79 364.5 80 210.0 81 155.0 82 100.0 83 82.5 84 65.0 85 39.0 86 13.0 87 13.5 88 14.0 89 11.0 90 8.0 91 5.5 92 3.0 93 1.5 94 0.0 95 1.0 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 512850.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 33.345404419751674 #Duplication Level Percentage of deduplicated Percentage of total 1 74.0248126557137 24.68387315101125 2 9.856129469375482 6.573132463395156 3 3.597882393566133 3.599185304045005 4 1.8506277543026473 2.4683972359055444 5 1.1624237761210954 1.9380745460946396 6 0.8460950919355256 1.692802981089424 7 0.6913041004439046 1.613627036443424 8 0.5965409159119711 1.5913518475211001 9 0.5161233909989956 1.5489308883019615 >10 6.738020590398731 45.574379847900175 >50 0.07826128207757846 1.7704442823981659 >100 0.033540549461819336 1.961164867845469 >500 0.004707445538500959 1.2316390070501262 >1k 0.0035305841538757193 3.752996540998528 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GAATCTGTCTCTTATACACATCTGACGCCCCTTGTATCGTATGCCGTCTTC 4913 0.957979916154821 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCCCCTTGTATCGTATGC 4793 0.9345812615774594 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCCCCTTGTATCGTATGCCG 4230 0.8248025738520036 No Hit GCTGTCTCTTATACACATCTGACGCCCCTTGTATCGTATGCCGTCTTCTGC 2367 0.46153846153846156 TruSeq Adapter, Index 14 (95% over 21bp) CCTGTCTCTTATACACATCTGACGCCCCTTGTATCGTATGCCGTCTTCTGC 1443 0.28136882129277563 TruSeq Adapter, Index 14 (95% over 21bp) GAATGCTGTCTCTTATACACATCTGACGCCCCTTGTATCGTATGCCGTCTT 1381 0.2692795164278054 No Hit GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG 959 0.18699424783074972 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 930 0.18133957297455397 No Hit CTGTCTCTTATACACATCTGACGCCCCTTGTATCGTATGCCGTCTTCTGCT 914 0.17821975236423906 Illumina Paired End PCR Primer 2 (95% over 21bp) GAATGACTGTCTCTTATACACATCTGACGCCCCTTGTATCGTATGCCGTCT 834 0.1626206493126645 No Hit GAACTGTCTCTTATACACATCTGACGCCCCTTGTATCGTATGCCGTCTTCT 818 0.1595008287023496 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCCCTTGTAT 651 0.12693770108218777 No Hit GAATGATCTGTCTCTTATACACATCTGACGCCCCTTGTATCGTATGCCGTC 610 0.11894316076825583 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCCCTTGTATCGTA 561 0.10938871014916643 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 5.84966364434045E-4 0.0 0.0 0.1914789899580774 0.0 2 5.84966364434045E-4 0.0 0.0 1.1711026615969582 0.0 3 5.84966364434045E-4 0.0 0.0 1.6074875694647557 0.0 4 5.84966364434045E-4 0.0 0.0 2.2727893146144096 0.0 5 5.84966364434045E-4 0.0 0.0 4.5740469922979425 0.0 6 5.84966364434045E-4 0.0 0.0 5.719411133859803 0.0 7 5.84966364434045E-4 0.0 0.0 6.685385590328556 0.0 8 7.799551525787267E-4 0.0 0.0 7.9910305157453445 0.0 9 7.799551525787267E-4 0.0 0.0 8.432095154528614 0.0 10 7.799551525787267E-4 0.0 0.0 10.18660427025446 0.0 11 7.799551525787267E-4 0.0 0.0 11.547821000292483 0.0 12 7.799551525787267E-4 0.0 0.0 13.6260115043385 0.0 13 7.799551525787267E-4 0.0 0.0 14.203178317246758 0.0 14 7.799551525787267E-4 0.0 0.0 14.473627766403432 0.0 15 7.799551525787267E-4 0.0 0.0 14.95583503948523 0.0 16 7.799551525787267E-4 0.0 0.0 15.65311494589061 0.0 17 7.799551525787267E-4 0.0 0.0 16.42390562542654 0.0 18 7.799551525787267E-4 0.0 0.0 17.307984790874524 0.0 19 7.799551525787267E-4 0.0 0.0 17.952422735692696 0.0 20 7.799551525787267E-4 0.0 0.0 18.543823730135518 0.0 21 7.799551525787267E-4 0.0 0.0 19.17246758311397 0.0 22 7.799551525787267E-4 0.0 0.0 19.860193038900263 0.0 23 7.799551525787267E-4 0.0 0.0 20.493321634006044 0.0 24 7.799551525787267E-4 0.0 0.0 21.022716193818855 0.0 25 7.799551525787267E-4 0.0 0.0 21.487179487179485 0.0 26 7.799551525787267E-4 0.0 0.0 21.965291995710245 0.0 27 9.749439407234084E-4 0.0 0.0 22.527834649507653 0.0 28 9.749439407234084E-4 0.0 0.0 22.982353514672905 0.0 29 9.749439407234084E-4 0.0 0.0 23.496538949010432 0.0 30 9.749439407234084E-4 0.0 0.0 24.164375548405967 0.0 31 9.749439407234084E-4 0.0 0.0 24.63215365116506 0.0 32 9.749439407234084E-4 0.0 0.0 25.099346787559714 0.0 33 9.749439407234084E-4 0.0 0.0 25.565954957589938 0.0 34 0.00116993272886809 0.0 0.0 26.063371356147023 0.0 35 0.00116993272886809 0.0 0.0 26.576581846543824 0.0 36 0.00116993272886809 0.0 0.0 27.02993077898021 0.0 37 0.00116993272886809 0.0 0.0 27.480939845958858 0.0 38 0.00116993272886809 0.0 0.0 28.00253485424588 0.0 39 0.00116993272886809 0.0 0.0 28.78307497318904 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TACGGGT 60 0.0 45.000004 4 CGGTCTA 30 2.1631422E-6 45.000004 31 CTCGTAG 25 3.8877737E-5 45.0 1 TGCGATT 20 7.029629E-4 45.0 38 ATGACGG 20 7.029629E-4 45.0 2 TATCGAT 20 7.029629E-4 45.0 16 CTTACGG 25 3.8877737E-5 45.0 2 TTACGGG 110 0.0 40.909092 3 TCGATCA 50 1.0786607E-9 40.5 17 GCCTCGA 50 1.0786607E-9 40.5 14 CAACGAG 85 0.0 39.705883 14 CTACGGG 85 0.0 39.705883 3 TTCGCAC 40 3.453224E-7 39.375 43 TCAACGG 40 3.453224E-7 39.375 2 CACGACG 35 6.2415256E-6 38.571426 26 GCCGATA 35 6.2415256E-6 38.571426 9 TTAAGCG 35 6.2415256E-6 38.571426 1 CGTTTTT 605 0.0 37.561985 1 CAACGGG 120 0.0 37.500004 3 TAGACGG 60 1.546141E-10 37.500004 2 >>END_MODULE