SRR2936441.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936441.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1075356
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCAATAGGGGTCGTATGCCGTCTTCTGC	3832	0.3563471073765339	No Hit
GCTGTCTCTTATACACATCTGACGCAATAGGGGTCGTATGCCGTCTTCTGC	3536	0.32882133916582046	No Hit
CTGTCTCTTATACACATCTGACGCAATAGGGGTCGTATGCCGTCTTCTGCT	2719	0.2528464992058444	Illumina Single End Adapter 2 (95% over 21bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2414	0.22448379885358893	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	2413	0.22439080639341763	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAATAGGGGTCGTATGCC	1360	0.12646974583300785	No Hit
TCTGTCTCTTATACACATCTGACGCAATAGGGGTCGTATGCCGTCTTCTGC	1316	0.12237807758546937	No Hit
CGCTGTCTCTTATACACATCTGACGCAATAGGGGTCGTATGCCGTCTTCTG	1161	0.10796424625891332	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCTGTCTCTTATACACATCTGAC	1085	0.1008968192858923	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATAACG	25	3.8906368E-5	45.000004	1
CCGTAAG	20	7.033084E-4	45.0	1
ATCGATC	20	7.033084E-4	45.0	28
TACGACG	30	2.1653705E-6	44.999996	1
TTAACGG	70	0.0	41.785717	2
TAGCCGT	60	3.6379788E-12	41.249996	44
GACGTAG	45	1.9281288E-8	40.0	1
CGTTTTT	1480	0.0	39.83108	1
TAACGGG	345	0.0	39.130432	3
ACGTTAG	35	6.247914E-6	38.57143	1
ATCGTAA	35	6.247914E-6	38.57143	21
TACGATC	35	6.247914E-6	38.57143	11
TCACGAC	65	9.094947E-12	38.076927	25
AGGGATC	625	0.0	37.8	6
TAGTTCG	30	1.13987306E-4	37.499996	1
AACGGTA	30	1.13987306E-4	37.499996	24
TACGCGG	60	1.546141E-10	37.499996	2
TTACGCG	30	1.13987306E-4	37.499996	1
ACGCGCA	30	1.13987306E-4	37.499996	15
ATAACGG	115	0.0	37.173912	2