SRR2936437.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936437.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	382970
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGACAGAGTCGTATGC	4550	1.1880826174373973	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGACAGAGTCGTATGCCG	4268	1.1144476068621563	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGACAGAGTCGTATGCCGTCTTC	4220	1.1019139880408388	No Hit
GCTGTCTCTTATACACATCTGACGCAGACAGAGTCGTATGCCGTCTTCTGC	2113	0.5517403451967517	No Hit
GAATGACTGTCTCTTATACACATCTGACGCAGACAGAGTCGTATGCCGTCT	926	0.24179439642791867	No Hit
CCTGTCTCTTATACACATCTGACGCAGACAGAGTCGTATGCCGTCTTCTGC	910	0.23761652348747944	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAGACAGAGT	856	0.22351620231349714	No Hit
CTGTCTCTTATACACATCTGACGCAGACAGAGTCGTATGCCGTCTTCTGCT	715	0.1866986970258767	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCAGACAGAGTCGTATGCCGTC	649	0.169464971146565	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAGACAGAGTCGTA	627	0.1637203958534611	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	606	0.15823693761913465	No Hit
GAACTGTCTCTTATACACATCTGACGCAGACAGAGTCGTATGCCGTCTTCT	601	0.1569313523252474	No Hit
GAATAATACCTGTCTCTTATACACATCTGACGCAGACAGAGTCGTATGCCG	566	0.14779225526803666	No Hit
GAATAATACGGCTGTCTCTTATACACATCTGACGCAGACAGAGTCGTATGC	517	0.13499751938794163	No Hit
GAATATGTCTCTTATACACATCTGACGCAGACAGAGTCGTATGCCGTCTTC	395	0.10314123821709273	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGGGTA	35	1.2090823E-7	45.000004	5
CCCGTAA	35	1.2090823E-7	45.000004	41
TTAGGCG	20	7.02739E-4	45.0	1
AGACTCG	20	7.02739E-4	45.0	12
ACGTTTA	20	7.02739E-4	45.0	24
CGTTGAT	20	7.02739E-4	45.0	25
GTTAGTC	20	7.02739E-4	45.0	8
TATGCGG	25	3.8859176E-5	45.0	2
CCGTCGA	25	3.8859176E-5	45.0	41
CCCGTAG	20	7.02739E-4	45.0	19
TCTACGG	20	7.02739E-4	45.0	2
CTACACG	20	7.02739E-4	45.0	1
CGTCGAA	25	3.8859176E-5	45.0	42
AGTAGTC	20	7.02739E-4	45.0	15
AGTAGCG	25	3.8859176E-5	45.0	1
CGTTTGA	20	7.02739E-4	45.0	19
TACACGG	25	3.8859176E-5	45.0	2
GCGTAAG	40	6.7939254E-9	45.0	1
TCGAAAG	20	7.02739E-4	45.0	1
TAATACG	125	0.0	43.199997	4