FastQCFastQC Report
Sat 14 Jan 2017
SRR2936436.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2936436.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences681210
Sequences flagged as poor quality0
Sequence length51
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCCTGCCTAATCGTATGC161452.3700474156280733No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCTGCCTAATCGTATGCCG156702.300318550813993No Hit
GAATCTGTCTCTTATACACATCTGACGCCTGCCTAATCGTATGCCGTCTTC154782.2721334096680907No Hit
GCTGTCTCTTATACACATCTGACGCCTGCCTAATCGTATGCCGTCTTCTGC51450.7552737041440966No Hit
GAATGACTGTCTCTTATACACATCTGACGCCTGCCTAATCGTATGCCGTCT32840.4820833516830346No Hit
GAACTGTCTCTTATACACATCTGACGCCTGCCTAATCGTATGCCGTCTTCT27870.40912493944598577No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCTGCCTAAT27760.40751016573450183No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCTGCCTAATCGTATGCCGTC23850.3501123001717532No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCTGCCTAATCGTA23050.33836849136096064No Hit
GAATAATACGGCTGTCTCTTATACACATCTGACGCCTGCCTAATCGTATGC19190.28170461384888656No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT18700.2745115309522761No Hit
GAATAATACCTGTCTCTTATACACATCTGACGCCTGCCTAATCGTATGCCG18430.2705479954786336No Hit
GAATATGTCTCTTATACACATCTGACGCCTGCCTAATCGTATGCCGTCTTC15070.22122399847330484No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG11280.1655877042321751No Hit
GAATGCTGTCTCTTATACACATCTGACGCCTGCCTAATCGTATGCCGTCTT10580.1553118715227316No Hit
GAATGATACGGCGACCACCGATGAATGATACGGCGACCACCCCTGCCTAAT10430.153109907370708No Hit
CCTGTCTCTTATACACATCTGACGCCTGCCTAATCGTATGCCGTCTTCTGC10100.14826558623625608No Hit
GAATGATACGGCGACCACCGATGAATGATACGGCGACCCCCCATCGAATGC9690.1422468842207249No Hit
CTGTCTCTTATACACATCTGACGCCTGCCTAATCGTATGCCGTCTTCTGCT8250.12110802836129828No Hit
GAATGATACGGCGACCACCGATGAATGATACGGCGCCCCCCCATCGAATGC7810.11464893351536237No Hit
GAATGATACGGCCTGTCTCTTATACACATCTGACGCCTGCCTAATCGTATG6850.1005563629424113No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTTGCT351.2109558E-745.00000428
CGAACCC1100.045.034
GCGACGT207.031261E-445.017
CCGATCG253.8891274E-545.040
ACATTCG207.031261E-445.09
TAGCCGT253.8891274E-545.044
CCGTCTA551.8189894E-1245.041
ATCGTAA253.8891274E-545.041
GCGATCG253.8891274E-545.033
CTCGAAT207.031261E-445.035
ATACGCC502.1827873E-1145.028
CGATCGC253.8891274E-545.034
CGATCGA253.8891274E-545.041
TCGAACG207.031261E-445.01
TAATACG7100.044.36624
CCGATGA34550.044.08827618
GATGAAT37200.043.85080720
CGATGAA35350.043.7906619
CGTAAGC1300.043.2692343
AATACGG7300.043.1506845