##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2936436.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 681210 Sequences flagged as poor quality 0 Sequence length 51 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.778793617239913 31.0 31.0 34.0 30.0 34.0 2 31.887200716372337 33.0 31.0 34.0 30.0 34.0 3 31.894430498671483 33.0 31.0 34.0 30.0 34.0 4 35.58160185552179 37.0 35.0 37.0 33.0 37.0 5 31.855749328400933 37.0 35.0 37.0 0.0 37.0 6 33.62730582346119 37.0 35.0 37.0 17.0 37.0 7 35.2111008352784 37.0 35.0 37.0 32.0 37.0 8 35.351856255780156 37.0 35.0 37.0 33.0 37.0 9 37.19058293330985 39.0 37.0 39.0 34.0 39.0 10 36.91444928876558 39.0 37.0 39.0 33.0 39.0 11 36.901914240836156 39.0 37.0 39.0 33.0 39.0 12 36.75341818235199 39.0 35.0 39.0 33.0 39.0 13 36.50101290350993 39.0 35.0 39.0 32.0 39.0 14 37.516128653425525 40.0 36.0 41.0 32.0 41.0 15 37.60498524684018 40.0 36.0 41.0 32.0 41.0 16 37.84067908574448 40.0 36.0 41.0 33.0 41.0 17 37.53302652632815 40.0 36.0 41.0 32.0 41.0 18 37.62122546644941 39.0 36.0 41.0 33.0 41.0 19 37.52940796523833 39.0 36.0 41.0 32.0 41.0 20 37.068064179915154 39.0 35.0 41.0 31.0 41.0 21 37.427752088196 39.0 35.0 41.0 32.0 41.0 22 37.427951732945786 39.0 35.0 41.0 32.0 41.0 23 37.16841943013168 39.0 35.0 41.0 31.0 41.0 24 37.296476857356765 39.0 35.0 41.0 31.0 41.0 25 37.3850927026908 39.0 35.0 41.0 32.0 41.0 26 37.1542975000367 39.0 35.0 41.0 31.0 41.0 27 36.944943556318904 39.0 35.0 41.0 31.0 41.0 28 36.899690257042614 39.0 35.0 41.0 30.0 41.0 29 36.9014165969378 39.0 35.0 41.0 30.0 41.0 30 36.77123647627017 39.0 35.0 41.0 30.0 41.0 31 36.82602134437251 39.0 35.0 41.0 30.0 41.0 32 36.37663862832313 39.0 35.0 41.0 30.0 41.0 33 36.32033734090809 39.0 35.0 41.0 29.0 41.0 34 36.094555276640094 39.0 35.0 41.0 29.0 41.0 35 35.89720350552693 39.0 35.0 41.0 27.0 41.0 36 35.83256411385623 39.0 35.0 41.0 27.0 41.0 37 35.61443020507626 39.0 35.0 41.0 26.0 41.0 38 35.67066396559064 39.0 35.0 41.0 26.0 41.0 39 35.392789301390174 39.0 35.0 41.0 24.0 41.0 40 35.568196297764274 39.0 35.0 41.0 26.0 41.0 41 35.40157367038065 38.0 35.0 41.0 25.0 41.0 42 35.20826617342669 38.0 35.0 41.0 24.0 41.0 43 35.243380161770965 38.0 35.0 40.0 24.0 41.0 44 35.36261505262694 38.0 35.0 40.0 25.0 41.0 45 35.37302447116161 38.0 35.0 40.0 26.0 41.0 46 35.24326272368286 38.0 35.0 40.0 25.0 41.0 47 34.93393520353489 38.0 34.0 40.0 24.0 41.0 48 35.02436106340189 38.0 35.0 40.0 24.0 41.0 49 34.99912215029139 38.0 35.0 40.0 24.0 41.0 50 34.92097297455997 38.0 34.0 40.0 25.0 41.0 51 34.00324716313619 37.0 33.0 40.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 12.0 9 15.0 10 28.0 11 19.0 12 9.0 13 15.0 14 13.0 15 25.0 16 44.0 17 103.0 18 238.0 19 672.0 20 1867.0 21 4006.0 22 6650.0 23 8562.0 24 9469.0 25 9175.0 26 8618.0 27 7862.0 28 7768.0 29 8576.0 30 11023.0 31 14963.0 32 20389.0 33 29883.0 34 46042.0 35 53580.0 36 52812.0 37 78378.0 38 119407.0 39 180855.0 40 131.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 55.378664435343 16.06186051291085 18.475947211579395 10.083527840166761 2 27.813449597040563 36.062888096181794 20.23370179533477 15.889960511442874 3 27.29863037829744 36.72098178241659 22.135024441802088 13.84536339748389 4 24.570983984380735 20.70697729040971 38.191453443137945 16.53058528207161 5 31.517593693574668 32.20328533051482 19.61377548773506 16.665345488175454 6 21.499390789917943 42.17436620131824 23.44754187401829 12.878701134745526 7 69.15562014650402 4.714698844702808 21.918644764463235 4.211036244329942 8 68.16605745658461 16.840915429896803 9.7699681449186 5.223058968599991 9 64.45251831300186 4.846523098603955 9.973282834955446 20.727675753438735 10 45.357819174703835 18.95421382539892 19.06930315174469 16.61866384815255 11 37.16827410049765 20.667195138063153 22.55515920200819 19.609371559431015 12 26.029858633901444 17.715535591080577 28.34617812422014 27.908427650797847 13 29.507787613217655 20.176157132161887 34.01021711366539 16.305838140955064 14 21.047254150702425 30.782431262019056 27.664743617973897 20.50557096930462 15 17.54510356571395 21.10626678997666 37.07476402284171 24.27386562146768 16 21.245137329164283 21.868146386576825 25.79615683856667 31.09055944569222 17 21.163077465098866 26.707329604674037 29.171180693178318 22.95841223704878 18 21.72266995493313 21.51465774137197 28.63096548788186 28.13170681581304 19 20.709179254561736 24.516962463851087 25.447806109716538 29.326052171870643 20 26.75768118495031 25.1213282247765 29.735323908926762 18.38566668134643 21 21.439056972152493 33.27065075380573 27.322558388749428 17.967733885292347 22 19.187328430293153 20.070609650474893 34.225128814902895 26.51693310432906 23 24.36385255648038 27.100160009395047 28.41326463205179 20.122722802072783 24 22.595234949575023 27.723609459638 24.633372968688068 25.047782622098914 25 19.778335608696292 34.65906255046168 23.659370825442963 21.90323101539907 26 18.57298043187857 21.53491581157059 32.26523392199175 27.62686983455909 27 26.996227301419534 23.619735470706537 25.843132073809837 23.54090515406409 28 17.63186095330368 28.41326463205179 29.581626811115513 24.373247603529013 29 21.968702749519238 21.287121445662866 29.905021946242716 26.83915385857518 30 21.00849958162681 28.26103551034189 29.847036890239426 20.883428017791868 31 25.9796538512353 20.724446206015763 23.35476578441303 29.941134158335903 32 28.800076334757268 24.455013872374156 22.572628117614247 24.172281675254325 33 26.085935320972975 20.915283099191146 22.93272265527517 30.066058924560707 34 21.75305706023106 21.622113591990722 27.636264881607726 28.98856446617049 35 23.128844262415406 25.14936656831227 26.53117247251215 25.190616696760177 36 23.564979962126216 29.525990516874383 22.531524786776473 24.377504734222928 37 19.206852512441095 23.28180737217598 30.48399172061479 27.027348394768136 38 23.36885835498598 24.105195167422675 21.845099161785647 30.6808473158057 39 21.19507934410828 23.453707373643955 26.028831050630497 29.322382231617265 40 20.806065677250775 23.071006004022255 26.760470339542874 29.362457979184097 41 18.642562499082516 26.581817648008695 26.002260683196077 28.773359169712716 42 20.258657389057706 25.53059996183262 29.01190528618194 25.198837362927733 43 21.836438102787685 26.017527634650108 24.644235991838055 27.501798270724155 44 22.670982516404635 20.187166952922006 30.273924340511737 26.867926190161622 45 21.075292494238195 19.775840049323996 27.122179650915285 32.02668780552253 46 27.141703733063228 24.690917631860955 24.69796391714743 23.46941471792839 47 17.62261270386518 25.091528309919113 34.314968952305456 22.970890033910248 48 21.92965458522335 26.355896126011068 25.782064267993714 25.932385020771864 49 21.46973767267069 21.225172854185935 33.33259934528266 23.97249012786072 50 22.658504719543167 22.532111977217014 28.047738582815875 26.76164472042395 51 21.02817046138489 21.319416919892547 25.763714566726854 31.88869805199571 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 166.0 1 502.5 2 839.0 3 1990.5 4 3142.0 5 2030.0 6 918.0 7 892.0 8 866.0 9 866.5 10 867.0 11 904.0 12 941.0 13 966.5 14 992.0 15 945.5 16 899.0 17 907.0 18 915.0 19 1026.0 20 1137.0 21 1249.0 22 1361.0 23 1595.0 24 1829.0 25 2015.0 26 2806.0 27 3411.0 28 3985.5 29 4560.0 30 5407.5 31 6255.0 32 7456.0 33 8657.0 34 10053.5 35 11450.0 36 13340.0 37 15230.0 38 15936.0 39 16642.0 40 19102.0 41 21562.0 42 24134.5 43 26707.0 44 34545.5 45 42384.0 46 74777.0 47 107170.0 48 84435.0 49 61700.0 50 63832.0 51 65964.0 52 60273.0 53 54582.0 54 51838.0 55 49094.0 56 45741.5 57 42389.0 58 38599.5 59 34810.0 60 30409.5 61 26009.0 62 22801.0 63 19593.0 64 16794.0 65 13995.0 66 12196.0 67 10397.0 68 8747.0 69 7097.0 70 6221.0 71 5345.0 72 4510.0 73 3675.0 74 3208.5 75 2103.5 76 1465.0 77 1072.0 78 679.0 79 522.0 80 365.0 81 244.0 82 123.0 83 83.0 84 43.0 85 36.0 86 29.0 87 16.5 88 4.0 89 5.0 90 6.0 91 3.5 92 1.0 93 1.0 94 1.0 95 1.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 681210.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 31.016787890865533 #Duplication Level Percentage of deduplicated Percentage of total 1 72.03573801161399 22.34317206468191 2 10.505762697778307 6.517100264575141 3 4.096277892876839 3.8116014763620747 4 2.216950135154592 2.7505068842686264 5 1.4166060597321803 2.1969284839813916 6 0.962823840915082 1.7918221709958932 7 0.7590359678806725 1.648000033210485 8 0.6520335436144806 1.6179188896015815 9 0.5569325777191549 1.5546833669365212 >10 6.665249680503016 39.104134956645595 >50 0.07590273757081575 1.6409782022566457 >100 0.04371613366374607 2.4725680820875766 >500 0.004803970732279788 1.02469872848718 >1k 0.006245161951963724 3.7124282129210546 >5k 4.803970732279788E-4 0.7666242486646127 >10k+ 0.0014411912196839363 7.046833934323718 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATGATACGGCTGTCTCTTATACACATCTGACGCCTGCCTAATCGTATGC 16145 2.3700474156280733 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCCTGCCTAATCGTATGCCG 15670 2.300318550813993 No Hit GAATCTGTCTCTTATACACATCTGACGCCTGCCTAATCGTATGCCGTCTTC 15478 2.2721334096680907 No Hit GCTGTCTCTTATACACATCTGACGCCTGCCTAATCGTATGCCGTCTTCTGC 5145 0.7552737041440966 No Hit GAATGACTGTCTCTTATACACATCTGACGCCTGCCTAATCGTATGCCGTCT 3284 0.4820833516830346 No Hit GAACTGTCTCTTATACACATCTGACGCCTGCCTAATCGTATGCCGTCTTCT 2787 0.40912493944598577 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCTGCCTAAT 2776 0.40751016573450183 No Hit GAATGATCTGTCTCTTATACACATCTGACGCCTGCCTAATCGTATGCCGTC 2385 0.3501123001717532 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCTGCCTAATCGTA 2305 0.33836849136096064 No Hit GAATAATACGGCTGTCTCTTATACACATCTGACGCCTGCCTAATCGTATGC 1919 0.28170461384888656 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1870 0.2745115309522761 No Hit GAATAATACCTGTCTCTTATACACATCTGACGCCTGCCTAATCGTATGCCG 1843 0.2705479954786336 No Hit GAATATGTCTCTTATACACATCTGACGCCTGCCTAATCGTATGCCGTCTTC 1507 0.22122399847330484 No Hit GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG 1128 0.1655877042321751 No Hit GAATGCTGTCTCTTATACACATCTGACGCCTGCCTAATCGTATGCCGTCTT 1058 0.1553118715227316 No Hit GAATGATACGGCGACCACCGATGAATGATACGGCGACCACCCCTGCCTAAT 1043 0.153109907370708 No Hit CCTGTCTCTTATACACATCTGACGCCTGCCTAATCGTATGCCGTCTTCTGC 1010 0.14826558623625608 No Hit GAATGATACGGCGACCACCGATGAATGATACGGCGACCCCCCATCGAATGC 969 0.1422468842207249 No Hit CTGTCTCTTATACACATCTGACGCCTGCCTAATCGTATGCCGTCTTCTGCT 825 0.12110802836129828 No Hit GAATGATACGGCGACCACCGATGAATGATACGGCGCCCCCCCATCGAATGC 781 0.11464893351536237 No Hit GAATGATACGGCCTGTCTCTTATACACATCTGACGCCTGCCTAATCGTATG 685 0.1005563629424113 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 7.33988050674535E-4 0.0 0.0 0.12653953993628983 0.0 2 7.33988050674535E-4 0.0 0.0 1.1780508213326286 0.0 3 7.33988050674535E-4 0.0 0.0 1.4359742223396603 0.0 4 7.33988050674535E-4 0.0 0.0 2.140602750987214 0.0 5 7.33988050674535E-4 0.0 0.0 5.261079549624932 0.0 6 7.33988050674535E-4 0.0 0.0 6.032354193273734 0.0 7 7.33988050674535E-4 0.0 0.0 7.114546175188268 0.0 8 7.33988050674535E-4 0.0 0.0 8.32445207792017 0.0 9 7.33988050674535E-4 0.0 0.0 8.673389997210846 0.0 10 7.33988050674535E-4 0.0 0.0 12.038725209553588 0.0 11 7.33988050674535E-4 0.0 0.0 13.1094669778776 0.0 12 7.33988050674535E-4 0.0 0.0 16.674153344783548 0.0 13 7.33988050674535E-4 0.0 0.0 17.139501768911202 0.0 14 7.33988050674535E-4 0.0 0.0 17.399333538849987 0.0 15 7.33988050674535E-4 0.0 0.0 18.057133629864506 0.0 16 7.33988050674535E-4 0.0 0.0 18.69056531759663 0.0 17 7.33988050674535E-4 0.0 0.0 19.353062932135465 0.0 18 7.33988050674535E-4 0.0 0.0 20.060921008205987 0.0 19 7.33988050674535E-4 0.0 0.0 21.00938036728762 0.0 20 7.33988050674535E-4 0.0 0.0 21.509373027407115 0.0 21 7.33988050674535E-4 0.0 0.0 21.981474141600973 0.0 22 7.33988050674535E-4 0.0 0.0 22.6149058293331 0.0 23 7.33988050674535E-4 0.0 0.0 23.12708269109379 0.0 24 7.33988050674535E-4 0.0 0.0 23.53870318991207 0.0 25 7.33988050674535E-4 0.0 0.0 23.91391788141689 0.0 26 7.33988050674535E-4 0.0 0.0 24.266966133791342 0.0 27 7.33988050674535E-4 0.0 0.0 24.795143935056736 0.0 28 7.33988050674535E-4 0.0 0.0 25.1801940664406 0.0 29 7.33988050674535E-4 0.0 0.0 25.577428399465656 0.0 30 7.33988050674535E-4 0.0 0.0 26.107074176832402 0.0 31 7.33988050674535E-4 0.0 0.0 26.496381438910174 0.0 32 7.33988050674535E-4 0.0 0.0 26.868219785381893 0.0 33 7.33988050674535E-4 0.0 0.0 27.279987081810308 0.0 34 7.33988050674535E-4 0.0 0.0 27.70364498465965 0.0 35 7.33988050674535E-4 0.0 0.0 28.15813038563732 0.0 36 7.33988050674535E-4 0.0 0.0 28.530115529719176 0.0 37 8.80785660809442E-4 0.0 0.0 28.928230648405044 0.0 38 8.80785660809442E-4 0.0 0.0 29.39269828687189 0.0 39 8.80785660809442E-4 0.0 0.0 30.085436209098514 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTGCT 35 1.2109558E-7 45.000004 28 CGAACCC 110 0.0 45.0 34 GCGACGT 20 7.031261E-4 45.0 17 CCGATCG 25 3.8891274E-5 45.0 40 ACATTCG 20 7.031261E-4 45.0 9 TAGCCGT 25 3.8891274E-5 45.0 44 CCGTCTA 55 1.8189894E-12 45.0 41 ATCGTAA 25 3.8891274E-5 45.0 41 GCGATCG 25 3.8891274E-5 45.0 33 CTCGAAT 20 7.031261E-4 45.0 35 ATACGCC 50 2.1827873E-11 45.0 28 CGATCGC 25 3.8891274E-5 45.0 34 CGATCGA 25 3.8891274E-5 45.0 41 TCGAACG 20 7.031261E-4 45.0 1 TAATACG 710 0.0 44.3662 4 CCGATGA 3455 0.0 44.088276 18 GATGAAT 3720 0.0 43.850807 20 CGATGAA 3535 0.0 43.79066 19 CGTAAGC 130 0.0 43.26923 43 AATACGG 730 0.0 43.150684 5 >>END_MODULE