SRR2936435.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936435.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	476926
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCCGCAACTATCGTATGCCGTCTTC	3631	0.761334043436508	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCGCAACTATCGTATGC	3561	0.7466567140394946	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCGCAACTATCGTATGCCG	3149	0.6602701467313588	No Hit
GCTGTCTCTTATACACATCTGACGCCGCAACTATCGTATGCCGTCTTCTGC	2741	0.5747222839601951	No Hit
CCTGTCTCTTATACACATCTGACGCCGCAACTATCGTATGCCGTCTTCTGC	1327	0.27824023014052496	No Hit
CTGTCTCTTATACACATCTGACGCCGCAACTATCGTATGCCGTCTTCTGCT	1076	0.22561152044551983	TruSeq Adapter, Index 13 (96% over 25bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	993	0.20820840130334686	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCGCAACTATCGTATGCCGTCT	755	0.1583054813535014	No Hit
GAACTGTCTCTTATACACATCTGACGCCGCAACTATCGTATGCCGTCTTCT	716	0.15012811211802252	TruSeq Adapter, Index 13 (95% over 22bp)
TCTGTCTCTTATACACATCTGACGCCGCAACTATCGTATGCCGTCTTCTGC	681	0.14278944741951582	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCGCAACTAT	636	0.13335402137857863	No Hit
GAATGCTGTCTCTTATACACATCTGACGCCGCAACTATCGTATGCCGTCTT	611	0.12811211802250244	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCGCAACTATCGTATGCCGTC	577	0.1209831294582388	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCGCAACTATCGTA	534	0.11196705568578774	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGCGAC	30	2.1628202E-6	45.000004	9
CGCGACC	30	2.1628202E-6	45.000004	10
CCATCGA	30	2.1628202E-6	45.000004	41
CATCGAA	30	2.1628202E-6	45.000004	42
GGCGCGA	30	2.1628202E-6	45.000004	8
TGTAACG	30	2.1628202E-6	45.000004	1
CCACCCG	30	2.1628202E-6	45.000004	37
CGGAAGG	35	1.2099372E-7	45.0	2
CGAACGG	20	7.0291315E-4	45.0	2
CGCATTC	20	7.0291315E-4	45.0	12
CGCATGG	20	7.0291315E-4	45.0	2
AGGCGAC	20	7.0291315E-4	45.0	17
ACGGGTT	55	1.8189894E-12	45.0	5
TACGCAC	25	3.8873615E-5	45.0	33
GTTGTCG	20	7.0291315E-4	45.0	37
CGCTAGG	20	7.0291315E-4	45.0	2
CGCTAAT	20	7.0291315E-4	45.0	28
ACTCGTA	20	7.0291315E-4	45.0	10
CGAGCCC	25	3.8873615E-5	45.0	34
GATGACG	20	7.0291315E-4	45.0	1