SRR2936432.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936432.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	706142
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2944	0.41691331205338306	No Hit
GAATCTGTCTCTTATACACATCTGACGCTTCCGGTTTCGTATGCCGTCTTC	2797	0.3960959693659349	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTTCCGGTTTCGTATGCCG	2456	0.34780539891409945	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTTCCGGTTTCGTATGC	2449	0.3468140968813638	No Hit
GCTGTCTCTTATACACATCTGACGCTTCCGGTTTCGTATGCCGTCTTCTGC	1643	0.23267274854066178	TruSeq Adapter, Index 21 (95% over 23bp)
CCTGTCTCTTATACACATCTGACGCTTCCGGTTTCGTATGCCGTCTTCTGC	1098	0.1554928045633881	TruSeq Adapter, Index 21 (95% over 23bp)
CGCTGTCTCTTATACACATCTGACGCTTCCGGTTTCGTATGCCGTCTTCTG	815	0.11541587952564783	No Hit
CTGTCTCTTATACACATCTGACGCTTCCGGTTTCGTATGCCGTCTTCTGCT	783	0.11088421309028496	Illumina Paired End PCR Primer 2 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTACGCC	25	3.889271E-5	45.000004	23
CGGTAAT	20	7.031436E-4	45.0	6
TATGCGG	80	0.0	42.1875	2
TATACGG	65	0.0	41.538464	2
CGTTTTT	1375	0.0	40.745453	1
TACGGGA	315	0.0	40.714287	4
CGTTATT	175	0.0	39.857143	1
AGGGCGC	115	0.0	39.130432	6
ATTACGG	35	6.244867E-6	38.571426	2
CGTAAGG	130	0.0	38.076927	2
CGATGAA	405	0.0	37.777775	19
GTTGACG	30	1.1394762E-4	37.499996	1
ACGATAG	30	1.1394762E-4	37.499996	1
AGGTTCG	30	1.1394762E-4	37.499996	1
ACTACCG	30	1.1394762E-4	37.499996	1
CGAATAT	30	1.1394762E-4	37.499996	14
CCGACGG	30	1.1394762E-4	37.499996	2
CCCATCG	30	1.1394762E-4	37.499996	40
AGGGTAC	175	0.0	37.285713	6
TTACGGG	145	0.0	37.24138	3