SRR2936430.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936430.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	192899
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCTAGCAGAGTCGTATGC	2075	1.0756924608214662	No Hit
GAATCTGTCTCTTATACACATCTGACGCTAGCAGAGTCGTATGCCGTCTTC	1904	0.987045033929673	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTAGCAGAGTCGTATGCCG	1752	0.9082473211369682	No Hit
GCTGTCTCTTATACACATCTGACGCTAGCAGAGTCGTATGCCGTCTTCTGC	1314	0.6811854908527261	No Hit
CCTGTCTCTTATACACATCTGACGCTAGCAGAGTCGTATGCCGTCTTCTGC	645	0.33437187336378105	No Hit
CTGTCTCTTATACACATCTGACGCTAGCAGAGTCGTATGCCGTCTTCTGCT	551	0.28564170887355556	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTAGCAGAGTCGTATGCCGTCT	477	0.24727966448763344	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	427	0.2213593642268752	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTAGCAGAGT	387	0.20062312401826865	No Hit
TCTGTCTCTTATACACATCTGACGCTAGCAGAGTCGTATGCCGTCTTCTGC	331	0.1715923877262194	No Hit
GAACTGTCTCTTATACACATCTGACGCTAGCAGAGTCGTATGCCGTCTTCT	317	0.16433470365320713	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTAGCAGAGTCGTATGCCGTC	311	0.16122426762191613	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTAGCAGAGTCGTA	305	0.15811383159062514	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	290	0.15033774151239768	No Hit
GAATAATACGGCTGTCTCTTATACACATCTGACGCTAGCAGAGTCGTATGC	237	0.12286222323599397	No Hit
GAATGCTGTCTCTTATACACATCTGACGCTAGCAGAGTCGTATGCCGTCTT	231	0.11975178720470298	No Hit
GAATAATACCTGTCTCTTATACACATCTGACGCTAGCAGAGTCGTATGCCG	226	0.11715975717862717	No Hit
ACTGTCTCTTATACACATCTGACGCTAGCAGAGTCGTATGCCGTCTTCTGC	213	0.11042047911083003	No Hit
GAATATGTCTCTTATACACATCTGACGCTAGCAGAGTCGTATGCCGTCTTC	202	0.10471801305346322	No Hit
GTCGAAGGGATTCAGTTAGCACTATTGTTGTAATTTGTACTGAAACCCATA	193	0.10005235900652674	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTCGAAG	30	2.1560809E-6	45.000004	1
AAGCGGC	45	3.8198777E-10	45.000004	22
AAGTGCG	30	2.1560809E-6	45.000004	1
AGCACGG	30	2.1560809E-6	45.000004	2
CCTTATA	20	7.018676E-4	45.0	28
TAATACG	50	2.1827873E-11	45.0	4
CAGCGCG	20	7.018676E-4	45.0	1
CGGCGAA	35	1.2049168E-7	45.0	31
GAAGCGG	35	1.2049168E-7	45.0	2
CGAACGG	25	3.8787002E-5	45.0	2
CGAACCC	20	7.018676E-4	45.0	34
GTATTAG	20	7.018676E-4	45.0	1
CGCGGGT	25	3.8787002E-5	45.0	4
TGAAGCG	20	7.018676E-4	45.0	1
GCGAACC	25	3.8787002E-5	45.0	33
AACCCAT	20	7.018676E-4	45.0	44
TTATGCA	25	3.8787002E-5	45.0	14
CAGCACG	20	7.018676E-4	45.0	1
GGCCGGT	20	7.018676E-4	45.0	9
TTCACGG	20	7.018676E-4	45.0	2

Summary

Basic Statistics

Per base sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content