SRR2936428.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936428.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	441813
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCGGTCCAATTCGTATGCCGTCTTCTGC	1524	0.3449423172247082	No Hit
GAATCTGTCTCTTATACACATCTGACGCGGTCCAATTCGTATGCCGTCTTC	1233	0.27907734720345484	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGGTCCAATTCGTATGC	1129	0.25553797647420967	No Hit
CCTGTCTCTTATACACATCTGACGCGGTCCAATTCGTATGCCGTCTTCTGC	1129	0.25553797647420967	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGGTCCAATTCGTATGCCG	1065	0.24105220987159726	No Hit
CTGTCTCTTATACACATCTGACGCGGTCCAATTCGTATGCCGTCTTCTGCT	762	0.1724711586123541	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	742	0.1679443565490377	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	681	0.15413761025592276	No Hit
TCTGTCTCTTATACACATCTGACGCGGTCCAATTCGTATGCCGTCTTCTGC	448	0.10140036621828692	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGATCGG	35	1.2096643E-7	45.0	2
AAGTACG	20	7.0285675E-4	45.0	1
TAATACG	50	2.1827873E-11	45.0	4
GCCGATG	40	6.7993824E-9	45.0	9
TACTACG	25	3.8868937E-5	45.0	1
AGTACGG	20	7.0285675E-4	45.0	2
TACACGG	45	3.8380676E-10	45.0	2
CGCACGG	90	0.0	42.5	2
GTTATGG	115	0.0	41.08696	2
ACGGGAA	185	0.0	40.135136	5
CCACGGG	45	1.9237632E-8	40.0	3
AACGGGA	220	0.0	39.886364	4
CACGGGA	170	0.0	39.705883	4
CGACAGG	40	3.451787E-7	39.375	2
GCGTATG	40	3.451787E-7	39.375	1
CGAGACA	250	0.0	38.699997	22
CGTATGG	70	0.0	38.571426	2
CGAAAAC	35	6.239561E-6	38.571426	19
TACGGGT	35	6.239561E-6	38.571426	4
TCTACGG	35	6.239561E-6	38.571426	2