##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2936427.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 242848 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.947522730267494 33.0 31.0 34.0 30.0 34.0 2 32.05659918961655 33.0 31.0 34.0 30.0 34.0 3 32.04322456845434 33.0 31.0 34.0 30.0 34.0 4 35.70516125312953 37.0 35.0 37.0 35.0 37.0 5 32.14310597575438 37.0 35.0 37.0 0.0 37.0 6 33.856618131506124 37.0 35.0 37.0 18.0 37.0 7 35.41055722097773 37.0 35.0 37.0 32.0 37.0 8 35.532625345895376 37.0 35.0 37.0 33.0 37.0 9 37.446966826986426 39.0 37.0 39.0 35.0 39.0 10 37.19970516537093 39.0 37.0 39.0 34.0 39.0 11 37.197749209382 39.0 37.0 39.0 34.0 39.0 12 37.047729443932006 39.0 37.0 39.0 33.0 39.0 13 36.78621195150876 39.0 35.0 39.0 33.0 39.0 14 37.968189978916854 40.0 37.0 41.0 33.0 41.0 15 37.98650596257742 40.0 37.0 41.0 33.0 41.0 16 38.15896774937409 40.0 37.0 41.0 34.0 41.0 17 38.034618362103046 40.0 36.0 41.0 33.0 41.0 18 38.01836951508763 40.0 36.0 41.0 34.0 41.0 19 37.90384932138622 40.0 36.0 41.0 34.0 41.0 20 37.76919307550402 40.0 36.0 41.0 33.0 41.0 21 37.93397104361576 40.0 36.0 41.0 34.0 41.0 22 37.94816510739228 40.0 36.0 41.0 33.0 41.0 23 37.87443174331269 40.0 36.0 41.0 33.0 41.0 24 37.86365957306628 40.0 36.0 41.0 33.0 41.0 25 37.778149295032286 40.0 36.0 41.0 33.0 41.0 26 37.73317466069311 40.0 36.0 41.0 33.0 41.0 27 37.616064369482146 40.0 36.0 41.0 33.0 41.0 28 37.58173837132692 40.0 36.0 41.0 33.0 41.0 29 37.56649838582158 40.0 36.0 41.0 33.0 41.0 30 37.46445513242851 40.0 36.0 41.0 33.0 41.0 31 37.47832388984056 40.0 35.0 41.0 33.0 41.0 32 37.16319673211227 40.0 35.0 41.0 32.0 41.0 33 37.17815258927395 40.0 35.0 41.0 32.0 41.0 34 36.96301801950191 39.0 35.0 41.0 32.0 41.0 35 36.77561684675188 39.0 35.0 41.0 31.0 41.0 36 36.77512271050204 39.0 35.0 41.0 31.0 41.0 37 36.59629480168665 39.0 35.0 41.0 31.0 41.0 38 36.5346060086968 39.0 35.0 41.0 31.0 41.0 39 36.542302180787985 39.0 35.0 41.0 31.0 41.0 40 36.32244860983002 39.0 35.0 41.0 30.0 41.0 41 36.30259668599288 39.0 35.0 41.0 30.0 41.0 42 36.118955066543684 39.0 35.0 41.0 30.0 41.0 43 36.19918220450652 39.0 35.0 41.0 30.0 41.0 44 36.310091085782055 39.0 35.0 41.0 31.0 41.0 45 36.3797025299776 39.0 35.0 41.0 31.0 41.0 46 36.32101149690341 39.0 35.0 40.0 31.0 41.0 47 36.04315868362103 38.0 35.0 40.0 30.0 41.0 48 36.08826508762683 38.0 35.0 40.0 30.0 41.0 49 36.09118049150086 38.0 35.0 40.0 30.0 41.0 50 35.972167775728025 38.0 35.0 40.0 30.0 41.0 51 34.924306562129395 37.0 34.0 40.0 27.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 6 1.0 7 1.0 8 3.0 9 10.0 10 8.0 11 1.0 12 4.0 13 2.0 14 4.0 15 11.0 16 14.0 17 25.0 18 50.0 19 135.0 20 378.0 21 854.0 22 1190.0 23 1407.0 24 1568.0 25 1705.0 26 1919.0 27 1986.0 28 2224.0 29 2583.0 30 3442.0 31 4708.0 32 6579.0 33 9808.0 34 15964.0 35 22599.0 36 18552.0 37 28840.0 38 46642.0 39 69587.0 40 44.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 52.268497166952166 16.912636711029123 19.863041902753984 10.955824219264725 2 28.95473711951509 33.867686783502435 21.167973382527343 16.00960271445513 3 28.23206285413098 33.81497891685334 23.323642772433786 14.629315456581896 4 25.971801291342732 21.66746277506918 35.03673079457109 17.324005139017 5 29.481404005797867 33.296135854526284 19.1906048227698 18.031855316906046 6 22.99092436421136 39.89203122941099 22.734797074713402 14.38224733166425 7 70.18299512452234 5.223020160758994 19.24413624983529 5.349848464883384 8 68.25421662933194 14.306479773356173 10.80964224535512 6.62966135195678 9 63.47468375280011 6.651485702991171 11.622908156542364 18.25092238766636 10 41.3274970351825 22.817976676769007 19.852747397549084 16.00177889049941 11 35.27803399657399 22.280191724864938 23.240874950586374 19.2008993279747 12 28.232474634339177 18.778824614573725 29.128096587165636 23.860604163921465 13 25.493312689418897 24.511628673079457 33.353373303465546 16.641685334036104 14 19.702859401765714 32.748056397417315 25.598728422717095 21.95035577809988 15 15.26098629595467 23.897664382659112 39.99991764395836 20.841431677427856 16 16.840575174594807 23.848250757675583 30.607211095005933 28.70396297272368 17 17.384948609830015 25.187359994729213 31.133466201080513 26.29422519436026 18 19.550500724733165 23.465295164053234 30.682155092897617 26.30204901831598 19 19.692564896560814 26.39922914745026 26.794126367110294 27.114079588878642 20 24.841464619844512 24.417742785610752 31.586836210304387 19.15395638424035 21 21.91164843852945 31.541952167611015 26.768595994202133 19.777803399657397 22 19.218605876927132 23.366056133877983 29.252042429832652 28.163295559362233 23 19.286549611279483 30.488206614837267 27.711160890762947 22.514082883120306 24 21.865529055211493 24.64257477928581 27.279203452365262 26.212692713137436 25 17.77366912636711 32.66487679536171 26.09904137567532 23.462412702595863 26 18.294571089735143 24.182616286730795 31.647367900909213 25.875444722624852 27 23.15234220582422 28.871969297667675 25.45378178943207 22.52190670707603 28 17.27829753590723 26.937837659770718 32.82547107655817 22.958393727763866 29 21.161384899196207 24.08214191593095 31.45877256555541 23.297700619317432 30 20.761134536829623 31.539069706153644 27.71692581367769 19.982869943339043 31 27.415090921069968 24.556924495981026 22.68661879035446 25.341365792594544 32 25.812854130979048 30.911104888654634 24.47168599288444 18.80435498748188 33 27.77169258136777 24.1924990117275 22.274015021741995 25.761793385162733 34 25.908798919488735 23.432764527605745 28.653725787323758 22.004710765581763 35 22.416902753986033 25.909210699696928 28.06117406772961 23.61271247858743 36 29.794356964026882 24.14637962840954 27.188200026353933 18.871063381209645 37 21.355333377256557 30.605563974173144 29.2158057715114 18.8232968770589 38 27.07701937014099 25.361543022796152 23.57606404005798 23.985373567004874 39 27.60986295954671 25.94997694030834 25.69096718935301 20.749192910791937 40 25.338895111345366 22.032711819739095 31.399476215575174 21.22891685334036 41 25.947506259059168 23.477648570299117 25.505254315456583 25.069590855185137 42 22.50090591645803 22.367489129002504 33.00624258795625 22.12536236658321 43 28.18347278956384 23.637419291079194 25.027177493740943 23.151930425616023 44 24.147203188825934 23.912076689945973 28.582076031097642 23.35864409013045 45 22.423079457108976 22.516965344577677 26.90654236394782 28.153412834365525 46 28.820084991434975 25.67284886019238 25.30883515614705 20.19823099222559 47 20.61165832125445 23.72389313480037 35.557632757939125 20.10681578600606 48 24.348975490842008 23.73665832125445 26.530587033864805 25.383779154038738 49 22.141833574911054 20.042166293319276 34.797074713400974 23.018925418368692 50 23.82436750560021 20.918846356568718 30.604740413756755 24.652045724074316 51 21.964768085386744 21.480102780339966 26.017920674660694 30.537208459612597 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 102.0 1 253.5 2 405.0 3 684.0 4 963.0 5 656.5 6 350.0 7 343.5 8 337.0 9 334.5 10 332.0 11 341.5 12 351.0 13 389.0 14 427.0 15 403.0 16 379.0 17 369.5 18 360.0 19 415.0 20 470.0 21 516.0 22 562.0 23 585.5 24 609.0 25 837.5 26 1322.0 27 1578.0 28 1786.5 29 1995.0 30 2419.5 31 2844.0 32 3179.5 33 3515.0 34 4162.5 35 4810.0 36 5153.5 37 5497.0 38 6053.0 39 6609.0 40 7814.5 41 9020.0 42 10771.0 43 12522.0 44 15566.0 45 18610.0 46 30332.5 47 42055.0 48 34024.5 49 25994.0 50 25976.0 51 25958.0 52 22033.5 53 18109.0 54 16005.5 55 13902.0 56 12121.0 57 10340.0 58 9182.5 59 8025.0 60 7507.5 61 6990.0 62 6648.5 63 6307.0 64 5187.0 65 4067.0 66 3486.5 67 2906.0 68 2332.0 69 1758.0 70 1403.5 71 1049.0 72 893.5 73 738.0 74 558.0 75 361.0 76 344.0 77 239.5 78 135.0 79 94.0 80 53.0 81 35.0 82 17.0 83 11.0 84 5.0 85 3.0 86 1.0 87 1.5 88 2.0 89 2.0 90 2.0 91 1.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 242848.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 35.081203057056264 #Duplication Level Percentage of deduplicated Percentage of total 1 73.89839660069958 25.92444656740018 2 10.43031199380238 7.318157860060614 3 3.8559053454468626 4.058093951772302 4 2.025964269784257 2.84293055738569 5 1.2125267037584808 2.1268447753327187 6 0.8850388525013498 1.8628936618790355 7 0.6725825762377632 1.6516504150744498 8 0.5716365002230204 1.6042956911319013 9 0.4906448810949128 1.5491171432336275 >10 5.8419607014578485 36.58008301488997 >50 0.06925370331243984 1.6042956911319013 >100 0.0305185811207362 2.0778429305573853 >500 0.009390332652534217 2.5106239293714587 >1k 0.0023475831631335543 1.4189945974436684 >5k 0.0035213747447003308 6.8697292133350905 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATGATACGGCTGTCTCTTATACACATCTGACGCTAGAGGTGTCGTATGC 5989 2.4661516668862826 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCTAGAGGTGTCGTATGCCG 5641 2.3228521544340492 No Hit GAATCTGTCTCTTATACACATCTGACGCTAGAGGTGTCGTATGCCGTCTTC 5053 2.080725392014758 No Hit GCTGTCTCTTATACACATCTGACGCTAGAGGTGTCGTATGCCGTCTTCTGC 2244 0.9240347871919885 TruSeq Adapter, Index 21 (95% over 22bp) GAATGACTGTCTCTTATACACATCTGACGCTAGAGGTGTCGTATGCCGTCT 1202 0.4949598102516801 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTAGAGGTGT 953 0.3924265384108578 No Hit CCTGTCTCTTATACACATCTGACGCTAGAGGTGTCGTATGCCGTCTTCTGC 834 0.3434246936355251 TruSeq Adapter, Index 21 (95% over 22bp) GAATGATCTGTCTCTTATACACATCTGACGCTAGAGGTGTCGTATGCCGTC 831 0.3421893530109369 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTAGAGGTGTCGTA 829 0.34136579259454475 No Hit GAACTGTCTCTTATACACATCTGACGCTAGAGGTGTCGTATGCCGTCTTCT 774 0.3187178811437607 No Hit GAATAATACGGCTGTCTCTTATACACATCTGACGCTAGAGGTGTCGTATGC 673 0.2771280801159573 No Hit CTGTCTCTTATACACATCTGACGCTAGAGGTGTCGTATGCCGTCTTCTGCT 609 0.25077414679140864 TruSeq Adapter, Index 15 (95% over 22bp) GAATAATACCTGTCTCTTATACACATCTGACGCTAGAGGTGTCGTATGCCG 594 0.2445974436684675 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 478 0.196830939517723 No Hit GAATATGTCTCTTATACACATCTGACGCTAGAGGTGTCGTATGCCGTCTTC 428 0.17624192910791936 No Hit GAATGCTGTCTCTTATACACATCTGACGCTAGAGGTGTCGTATGCCGTCTT 321 0.13218144683093952 No Hit TCTGTCTCTTATACACATCTGACGCTAGAGGTGTCGTATGCCGTCTTCTGC 264 0.10870997496376335 TruSeq Adapter, Index 21 (95% over 22bp) ACTGTCTCTTATACACATCTGACGCTAGAGGTGTCGTATGCCGTCTTCTGC 258 0.1062392937145869 TruSeq Adapter, Index 15 (95% over 21bp) GAATGATACGGCCTGTCTCTTATACACATCTGACGCTAGAGGTGTCGTATG 247 0.10170971142443008 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0012353406245882198 0.0 0.0 0.2598333113717222 0.0 2 0.0012353406245882198 0.0 0.0 1.7998912900250363 0.0 3 0.0012353406245882198 0.0 0.0 2.2116714982211096 0.0 4 0.0012353406245882198 0.0 0.0 3.0006423771247857 0.0 5 0.0012353406245882198 0.0 0.0 6.471537752009487 0.0 6 0.0012353406245882198 0.0 0.0 7.415337989194887 0.0 7 0.0012353406245882198 0.0 0.0 8.769683093951773 0.0 8 0.0012353406245882198 0.0 0.0 10.391685334036104 0.0 9 0.0012353406245882198 0.0 0.0 10.885821583871392 0.0 10 0.0012353406245882198 0.0 0.0 14.515664119119778 0.0 11 0.0012353406245882198 0.0 0.0 15.964306891553564 0.0 12 0.0012353406245882198 0.0 0.0 19.919044011068653 0.0 13 0.0012353406245882198 0.0 0.0 20.582421926472527 0.0 14 0.0012353406245882198 0.0 0.0 20.883845038872053 0.0 15 0.0012353406245882198 0.0 0.0 21.68434576360522 0.0 16 0.0012353406245882198 0.0 0.0 22.645028989326658 0.0 17 0.0012353406245882198 0.0 0.0 23.6575965212808 0.0 18 0.0012353406245882198 0.0 0.0 24.751696534457768 0.0 19 0.0012353406245882198 0.0 0.0 25.84085518513638 0.0 20 0.0012353406245882198 0.0 0.0 26.503821320332058 0.0 21 0.0012353406245882198 0.0 0.0 27.17584662010805 0.0 22 0.0012353406245882198 0.0 0.0 27.953287653182237 0.0 23 0.0012353406245882198 0.0 0.0 28.65331400711556 0.0 24 0.0012353406245882198 0.0 0.0 29.209629068388455 0.0 25 0.0012353406245882198 0.0 0.0 29.70541243905653 0.0 26 0.0012353406245882198 0.0 0.0 30.196666227434445 0.0 27 0.0012353406245882198 0.0 0.0 30.756687310581103 0.0 28 0.0012353406245882198 0.0 0.0 31.1977039135591 0.0 29 0.0012353406245882198 0.0 0.0 31.693899064435367 0.0 30 0.0012353406245882198 0.0 0.0 32.24897878508367 0.0 31 0.0012353406245882198 0.0 0.0 32.73323230992226 0.0 32 0.0012353406245882198 0.0 0.0 33.23107458163131 0.0 33 0.0012353406245882198 0.0 0.0 33.682385689814204 0.0 34 0.0012353406245882198 0.0 0.0 34.13781460007906 0.0 35 0.0012353406245882198 0.0 0.0 34.641833574911054 0.0 36 0.0012353406245882198 0.0 0.0 35.0779088153907 0.0 37 0.0012353406245882198 0.0 0.0 35.54322045065226 0.0 38 0.0012353406245882198 0.0 0.0 35.99370799841876 0.0 39 0.0012353406245882198 0.0 0.0 36.44296020556068 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTCGAAT 55 1.8189894E-12 45.000004 43 CAGGTTC 20 7.0222875E-4 45.0 42 AGCGTTT 20 7.0222875E-4 45.0 4 CAGCGTT 20 7.0222875E-4 45.0 3 ATAGCAG 25 3.88169E-5 45.0 1 TAAACGG 25 3.88169E-5 45.0 2 CTAAGCG 20 7.0222875E-4 45.0 1 CGCGAGG 25 3.88169E-5 45.0 2 CCGTCGA 40 6.7775545E-9 45.0 41 CGTTATA 20 7.0222875E-4 45.0 10 AATGCGG 20 7.0222875E-4 45.0 2 TCAGCGT 20 7.0222875E-4 45.0 2 TCTAAGG 25 3.88169E-5 45.0 2 AACGCGG 20 7.0222875E-4 45.0 18 TCCACGT 20 7.0222875E-4 45.0 18 GGTATAT 20 7.0222875E-4 45.0 8 CGAATGC 40 6.7775545E-9 45.0 45 CGGGAGC 25 3.88169E-5 45.0 6 AACGACA 25 3.88169E-5 45.0 15 GTTCCCG 20 7.0222875E-4 45.0 45 >>END_MODULE