SRR2936425.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936425.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	272330
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTCAAAGGTCGTATGC	1754	0.6440715308632908	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGTCAAAGGTCGTATGCCG	1648	0.6051481658282231	No Hit
GAATCTGTCTCTTATACACATCTGACGCGTCAAAGGTCGTATGCCGTCTTC	1565	0.5746704366026512	No Hit
GCTGTCTCTTATACACATCTGACGCGTCAAAGGTCGTATGCCGTCTTCTGC	1493	0.5482319245033599	Illumina Single End Adapter 1 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCGTCAAAGGTCGTATGCCGTCTTCTGC	999	0.3668343553776668	Illumina Single End Adapter 1 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCGTCAAAGGTCGTATGCCGTCTTCTGCT	749	0.27503396614401643	Illumina Single End Adapter 1 (95% over 22bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	538	0.19755443763081557	No Hit
TCTGTCTCTTATACACATCTGACGCGTCAAAGGTCGTATGCCGTCTTCTGC	416	0.1527558476847942	Illumina Single End Adapter 1 (95% over 21bp)
GAATGACTGTCTCTTATACACATCTGACGCGTCAAAGGTCGTATGCCGTCT	333	0.12227811845922226	No Hit
ACTGTCTCTTATACACATCTGACGCGTCAAAGGTCGTATGCCGTCTTCTGC	293	0.1075900561818382	Illumina Single End Adapter 1 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAATACG	65	0.0	45.000004	4
GATCGTA	20	7.0237945E-4	45.000004	9
CAAAACG	30	2.1593805E-6	45.000004	9
GCGAACG	20	7.0237945E-4	45.000004	1
GTCCTCG	20	7.0237945E-4	45.000004	23
ATTACGG	20	7.0237945E-4	45.000004	2
CCTCGTT	20	7.0237945E-4	45.000004	25
TATGCGT	20	7.0237945E-4	45.000004	20
TCGATAT	20	7.0237945E-4	45.000004	16
ACGGGTA	20	7.0237945E-4	45.000004	5
ATCGTCT	20	7.0237945E-4	45.000004	40
GTTACGT	20	7.0237945E-4	45.000004	25
GCTTACG	35	1.2073724E-7	45.000004	1
TGTTACG	20	7.0237945E-4	45.000004	1
GAGCCCG	35	1.2073724E-7	45.000004	3
ACGTCCC	20	7.0237945E-4	45.000004	39
TTACGTG	20	7.0237945E-4	45.000004	26
AACCTCG	20	7.0237945E-4	45.000004	26
ACATCGT	20	7.0237945E-4	45.000004	38
CCACGAG	20	7.0237945E-4	45.000004	40