SRR2936420.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936420.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	702877
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7730	1.0997656773517983	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCTTGCTTCGTCGTATGCCGTCTT	1190	0.16930415990279948	No Hit
CGCTGTCTCTTATACACATCTGACGCTTGCTTCGTCGTATGCCGTCTTCTG	1158	0.16475144299785024	No Hit
CGTTCTGTCTCTTATACACATCTGACGCTTGCTTCGTCGTATGCCGTCTTC	926	0.13174424543696833	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	899	0.12790289054841744	No Hit
CCTGTCTCTTATACACATCTGACGCTTGCTTCGTCGTATGCCGTCTTCTGC	850	0.12093154278771392	No Hit
GCTGTCTCTTATACACATCTGACGCTTGCTTCGTCGTATGCCGTCTTCTGC	795	0.11310656060733244	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCTTGCTTCGTCGTATGCCGTCT	754	0.10727339207286624	No Hit
CTGTCTCTTATACACATCTGACGCTTGCTTCGTCGTATGCCGTCTTCTGCT	730	0.1038588543941543	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTAGTT	20	7.031413E-4	45.000004	39
CCGGTAT	50	2.1827873E-11	45.000004	42
CGTTTTT	2785	0.0	42.25314	1
ACCGGTA	55	6.002665E-11	40.909092	41
GCGTAAG	55	6.002665E-11	40.909092	1
CGTTATT	370	0.0	40.743244	1
CATACGA	95	0.0	40.263157	18
CGTAAGG	125	0.0	39.6	2
GTTCGAT	40	3.4556615E-7	39.375004	39
AACGGGA	265	0.0	39.056602	4
CGGGTAC	70	0.0	38.571426	6
GTACGAG	70	0.0	38.571426	1
ACGGGAT	200	0.0	38.250004	5
GTAGGGC	295	0.0	38.135593	4
CACGGGA	275	0.0	37.636364	4
CTCGTAG	30	1.1394706E-4	37.500004	1
CGCATCG	30	1.1394706E-4	37.500004	21
GACACGG	110	0.0	36.81818	2
GTTACGG	80	0.0	36.562504	2
AGCGCAA	105	0.0	36.428574	43