SRR2936413.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936413.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	232867
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGC	2564	1.1010576852881688	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCCG	2360	1.0134540317004985	No Hit
GAATCTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCCGTCTTC	2326	0.9988534227692202	No Hit
GCTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCCGTCTTCTGC	1680	0.7214418530749311	No Hit
CCTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCCGTCTTCTGC	1001	0.4298591041238132	No Hit
CTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCCGTCTTCTGCT	565	0.24262776606389058	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCCGTCT	540	0.23189202420265645	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	491	0.21084997015463763	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGACATGAGT	396	0.17005415108194805	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGACATGAGTCGTA	369	0.15845954987181524	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	356	0.1528769641039735	No Hit
TCTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCCGTCTTCTGC	350	0.15030038605727733	No Hit
GAACTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCCGTCTTCT	338	0.14514722996388496	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCCGTC	332	0.1425706519171888	No Hit
GAATAATACCTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCCG	295	0.12668175396256232	No Hit
GAATAATACGGCTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGC	279	0.1198108791713725	No Hit
ACTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCCGTCTTCTGC	240	0.1030631218678473	No Hit
GAATATGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCCGTCTTC	233	0.10005711414670176	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGCG	20	7.021689E-4	45.000004	19
AACGTCA	20	7.021689E-4	45.000004	44
GCGACGC	20	7.021689E-4	45.000004	23
CCGATGG	20	7.021689E-4	45.000004	10
ACTGAAC	30	2.1580236E-6	45.000004	16
ACACCGA	20	7.021689E-4	45.000004	44
GTCTCGC	20	7.021689E-4	45.000004	31
CACGCGA	20	7.021689E-4	45.000004	20
CGCGACG	20	7.021689E-4	45.000004	22
TACGGAG	20	7.021689E-4	45.000004	1
CGTTATT	30	2.1580236E-6	45.000004	1
TGCGATG	20	7.021689E-4	45.000004	1
CGAATGC	20	7.021689E-4	45.000004	45
CGCAGTA	20	7.021689E-4	45.000004	37
AATTCGG	20	7.021689E-4	45.000004	13
ACGTCAC	20	7.021689E-4	45.000004	45
CGTAAGG	60	0.0	45.000004	2
GGTTGCG	30	2.1580236E-6	45.000004	1
ATCGGGG	65	0.0	45.000004	4
CAGTAAC	20	7.021689E-4	45.000004	39