SRR2936412.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936412.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	557663
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCACCCTCTATCGTATGCCGTCTTCTGC	1843	0.3304863331438521	TruSeq Adapter, Index 16 (95% over 21bp)
GAATCTGTCTCTTATACACATCTGACGCACCCTCTATCGTATGCCGTCTTC	1739	0.31183707723123105	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCACCCTCTATCGTATGC	1415	0.25373747227268084	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCACCCTCTATCGTATGCCG	1250	0.22414971048823393	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1120	0.2008381405974576	No Hit
CCTGTCTCTTATACACATCTGACGCACCCTCTATCGTATGCCGTCTTCTGC	1109	0.19886562314516115	TruSeq Adapter, Index 16 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCACCCTCTATCGTATGCCGTCTTCTGCT	821	0.14722152984867204	TruSeq Adapter, Index 13 (95% over 22bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTTAGCG	20	7.0301583E-4	45.000004	1
ATTACGG	50	2.1827873E-11	45.000004	2
TAAACGG	20	7.0301583E-4	45.000004	2
CGGGCTA	25	3.8882128E-5	45.000004	6
TTAACGG	40	6.8048394E-9	45.000004	2
ACGTAAG	30	2.1634842E-6	45.000004	1
GCTAACG	30	2.1634842E-6	45.000004	1
CCGACGG	35	1.2104283E-7	45.0	2
ACGGGCC	75	0.0	42.0	5
AACGGGC	130	0.0	41.538464	4
CCGGTAT	55	6.002665E-11	40.909092	42
TAACGGG	150	0.0	40.5	3
GCGAGAC	190	0.0	40.26316	21
TCAAGCG	190	0.0	40.26316	17
ACGTTAG	45	1.9252184E-8	40.000004	1
CGCGAGG	80	0.0	39.375004	2
AAACGGG	110	0.0	38.86364	3
TATACGG	70	0.0	38.571426	2
CGTAAGG	100	0.0	38.250004	2
TAATACG	65	9.094947E-12	38.076927	4