SRR2936410.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936410.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	311839
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCAGTGCCATTCGTATGCCGTCTTCTGC	1607	0.5153300260711458	No Hit
CCTGTCTCTTATACACATCTGACGCAGTGCCATTCGTATGCCGTCTTCTGC	1350	0.43291570329561085	No Hit
CTGTCTCTTATACACATCTGACGCAGTGCCATTCGTATGCCGTCTTCTGCT	890	0.28540368587636566	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGTGCCATTCGTATGCCGTCTTC	854	0.2738592671218161	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGTGCCATTCGTATGC	850	0.27257655392686614	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGTGCCATTCGTATGCCG	820	0.2629562049647414	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	763	0.2446775419367045	No Hit
TCTGTCTCTTATACACATCTGACGCAGTGCCATTCGTATGCCGTCTTCTGC	549	0.17605238600688175	No Hit
ACTGTCTCTTATACACATCTGACGCAGTGCCATTCGTATGCCGTCTTCTGC	389	0.12474385820888344	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGTGCCATTCGTATGCC	353	0.1131994394543338	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	348	0.11159604796064636	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGGG	40	6.7884685E-9	45.000004	3
GTTTACG	20	7.02537E-4	45.000004	1
TCTAGCG	20	7.02537E-4	45.000004	1
TCGTCCC	20	7.02537E-4	45.000004	38
CTCGATG	20	7.02537E-4	45.000004	1
GTCCCCG	20	7.02537E-4	45.000004	32
AGTAGCG	20	7.02537E-4	45.000004	1
GACGAGC	25	3.8842452E-5	45.000004	9
TGTACGG	25	3.8842452E-5	45.000004	2
TATGGGT	55	1.8189894E-12	45.0	4
GACGGGT	35	1.2081182E-7	45.0	4
GCTAGCG	55	1.8189894E-12	45.0	1
CTAGCGG	75	0.0	45.0	2
CACGGGA	65	0.0	44.999996	4
ATAACGG	30	2.1603955E-6	44.999996	2
CGACTGG	45	3.8198777E-10	44.999996	2
TAGGGCG	70	0.0	41.785713	5
CCAAGCG	65	0.0	41.53846	20
GCGGCTA	65	0.0	41.53846	24
TACGGGT	55	6.002665E-11	40.909092	4