SRR2936408.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936408.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	172595
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCAAACGACGTCGTATGCCGTCTTCTGC	890	0.5156580433963904	No Hit
CCTGTCTCTTATACACATCTGACGCAAACGACGTCGTATGCCGTCTTCTGC	666	0.3858744459572989	No Hit
CTGTCTCTTATACACATCTGACGCAAACGACGTCGTATGCCGTCTTCTGCT	525	0.30418030649787076	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	513	0.2972276137779194	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	315	0.18250818389872245	No Hit
TCTGTCTCTTATACACATCTGACGCAAACGACGTCGTATGCCGTCTTCTGC	287	0.16628523421883598	No Hit
AGGAATGGGCACATTCAGCTATGCAGTCTTTTCTATTGCTGAAATATGCAT	283	0.16396766997885223	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAAACGACGTCGTATGCCG	276	0.15991193255888062	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAAACGACGTCGTATGC	251	0.14542715605898202	No Hit
GAATCTGTCTCTTATACACATCTGACGCAAACGACGTCGTATGCCGTCTTC	248	0.14368898287899418	No Hit
ACTGTCTCTTATACACATCTGACGCAAACGACGTCGTATGCCGTCTTCTGC	203	0.11761638517917669	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTATGG	30	2.1547512E-6	45.000004	2
CGCGGGT	30	2.1547512E-6	45.000004	4
CACATCC	25	3.87699E-5	45.000004	45
TTGTCGG	30	2.1547512E-6	45.000004	2
CAATTGC	25	3.87699E-5	45.000004	28
GCACATT	30	2.1547512E-6	45.000004	9
GTTGTGG	30	2.1547512E-6	45.000004	2
ATTGGTA	25	3.87699E-5	45.000004	15
TCATCCA	30	2.1547512E-6	45.000004	27
GGCGATA	50	2.1827873E-11	45.000004	8
ACATAAC	25	3.87699E-5	45.000004	31
TCGACGT	25	3.87699E-5	45.000004	26
TAGTCGG	25	3.87699E-5	45.000004	2
TGCGTAG	25	3.87699E-5	45.000004	1
GCCCCCG	20	7.0166134E-4	45.0	9
ACACGCG	40	6.7575456E-9	45.0	36
CGAGTAC	20	7.0166134E-4	45.0	35
GGGTATA	40	6.7575456E-9	45.0	7
GACGTAG	20	7.0166134E-4	45.0	1
TCTTAGG	20	7.0166134E-4	45.0	2