SRR2936407.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936407.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	267324
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCGCCATCAATCGTATGC	3895	1.4570334126378477	No Hit
GAATCTGTCTCTTATACACATCTGACGCGCCATCAATCGTATGCCGTCTTC	3785	1.4158848438598852	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGCCATCAATCGTATGCCG	3768	1.4095255195942002	No Hit
GCTGTCTCTTATACACATCTGACGCGCCATCAATCGTATGCCGTCTTCTGC	1812	0.6778291511424339	No Hit
CCTGTCTCTTATACACATCTGACGCGCCATCAATCGTATGCCGTCTTCTGC	929	0.3475183672247909	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGCCATCAATCGTATGCCGTCT	829	0.31011057742664333	No Hit
GAACTGTCTCTTATACACATCTGACGCGCCATCAATCGTATGCCGTCTTCT	623	0.23305053044245932	No Hit
GAATGCTGTCTCTTATACACATCTGACGCGCCATCAATCGTATGCCGTCTT	613	0.22930975146264457	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGCCATCAAT	611	0.22856159566668166	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGCCATCAATCGTA	556	0.20798731127770045	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGCCATCAATCGTATGCCGTC	534	0.19975759752210803	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	532	0.19900944172614507	No Hit
CTGTCTCTTATACACATCTGACGCGCCATCAATCGTATGCCGTCTTCTGCT	475	0.17768700154120093	No Hit
GAATAATACCTGTCTCTTATACACATCTGACGCGCCATCAATCGTATGCCG	407	0.1522497044784606	No Hit
GAATAATACGGCTGTCTCTTATACACATCTGACGCGCCATCAATCGTATGC	400	0.14963115919259026	No Hit
TCTGTCTCTTATACACATCTGACGCGCCATCAATCGTATGCCGTCTTCTGC	328	0.12269755053792401	No Hit
GAATATGTCTCTTATACACATCTGACGCGCCATCAATCGTATGCCGTCTTC	323	0.12082716104801663	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AAGTATG	20	7.023563E-4	45.000004	1
CACGGGC	40	6.7811925E-9	45.000004	4
CCAATCG	20	7.023563E-4	45.000004	40
CACGAAT	20	7.023563E-4	45.000004	20
GCGCAAT	20	7.023563E-4	45.000004	19
TCAGGCG	20	7.023563E-4	45.000004	1
TCGGCTT	20	7.023563E-4	45.000004	22
TTGAGTG	20	7.023563E-4	45.000004	32
GTAATAC	20	7.023563E-4	45.000004	40
TGTTGCG	20	7.023563E-4	45.000004	1
TCGTGCG	20	7.023563E-4	45.000004	1
GTGCTAG	20	7.023563E-4	45.000004	1
CTCGGAT	20	7.023563E-4	45.000004	39
GCCCTAG	20	7.023563E-4	45.000004	20
CGTAAGC	20	7.023563E-4	45.000004	43
CGGTAGT	20	7.023563E-4	45.000004	12
CAATCGG	20	7.023563E-4	45.000004	22
CTAGCGG	20	7.023563E-4	45.000004	2
GTCCTCC	25	3.8827482E-5	45.0	26
TCGATCA	25	3.8827482E-5	45.0	17