SRR2936406.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936406.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	532711
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGCCGTCTTCTGC	2457	0.46122569273020453	No Hit
GAATCTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGCCGTCTTC	2207	0.4142959315651451	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGC	2072	0.388953860536013	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGCCG	1865	0.3500960182913437	No Hit
CCTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGCCGTCTTCTGC	1654	0.31048729986803353	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1404	0.26355753870297405	No Hit
CTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGCCGTCTTCTGCT	1156	0.217003215627235	Illumina Single End Adapter 1 (95% over 21bp)
TCTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGCCGTCTTCTGC	641	0.12032790762721252	No Hit
CGCTGTCTCTTATACACATCTGACGCCGGTTTGTTCGTATGCCGTCTTCTG	595	0.11169283157284156	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTTTGCG	20	7.029873E-4	45.000004	1
TCTAGCG	20	7.029873E-4	45.000004	1
TGCGCCC	20	7.029873E-4	45.000004	17
TCGCTAG	20	7.029873E-4	45.000004	1
ACGGAGT	20	7.029873E-4	45.000004	5
CTCGCGC	35	1.2102828E-7	45.000004	33
TCGTAAG	20	7.029873E-4	45.000004	1
GTAACGG	80	0.0	45.000004	2
GCGTAAG	40	6.8030204E-9	45.000004	1
TCGCGCA	35	1.2102828E-7	45.000004	34
ACGGTTT	20	7.029873E-4	45.000004	17
ACCGAAC	45	3.8380676E-10	45.0	39
CGTTTTT	1010	0.0	42.549503	1
CGTAAGG	75	0.0	42.000004	2
CGAACGG	70	0.0	41.785717	2
TCGAACG	50	1.0786607E-9	40.5	1
TTTACGG	45	1.9250365E-8	40.0	2
CGTTAGG	90	0.0	40.0	2
CGGGCTC	45	1.9250365E-8	40.0	6
TCTCGCG	40	3.4535697E-7	39.375004	32