SRR2936405.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936405.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	540857
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1611	0.29786061750148374	No Hit
GCTGTCTCTTATACACATCTGACGCCTCGTTTGTCGTATGCCGTCTTCTGC	1220	0.22556794124879587	TruSeq Adapter, Index 20 (95% over 21bp)
GAATCTGTCTCTTATACACATCTGACGCCTCGTTTGTCGTATGCCGTCTTC	1070	0.19783417798050132	No Hit
CCTGTCTCTTATACACATCTGACGCCTCGTTTGTCGTATGCCGTCTTCTGC	1006	0.18600110565269562	TruSeq Adapter, Index 20 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCCTCGTTTGTCGTATGCCGTCTTCTGCT	753	0.13922349160683878	TruSeq Adapter, Index 27 (95% over 23bp)
GAATGATACGGCTGTCTCTTATACACATCTGACGCCTCGTTTGTCGTATGC	746	0.13792924932098502	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCTCGTTTGTCGTATGCCG	707	0.13071847087122845	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGTTTA	20	7.02997E-4	45.000004	38
GTTTACG	20	7.02997E-4	45.000004	1
GCGATAT	20	7.02997E-4	45.000004	9
CGGTCTA	45	3.8380676E-10	45.000004	31
TAGGCCG	20	7.02997E-4	45.000004	1
GCTAACG	25	3.8880564E-5	45.000004	1
CGTTATT	125	0.0	41.399998	1
CGTAAGG	60	3.6379788E-12	41.250004	2
CGACGGT	50	1.0786607E-9	40.500004	28
CGAATGG	50	1.0786607E-9	40.500004	2
GCGATAA	45	1.9250365E-8	40.000004	9
GGCGATA	175	0.0	38.571426	8
GACCGAT	230	0.0	38.152172	9
ACGGGTA	65	9.094947E-12	38.076927	5
ACGGGAG	315	0.0	37.857143	5
GTTGATC	125	0.0	37.8	16
ATAACGC	30	1.1391227E-4	37.500004	11
GTCGGTA	30	1.1391227E-4	37.500004	10
CGTTTTT	865	0.0	37.19653	1
CCACGGG	85	0.0	37.058823	3