##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2936405.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 540857 Sequences flagged as poor quality 0 Sequence length 51 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.03842420454944 33.0 31.0 34.0 30.0 34.0 2 32.14837378456782 33.0 31.0 34.0 30.0 34.0 3 32.08450477667849 33.0 31.0 34.0 30.0 34.0 4 35.72628439679989 37.0 35.0 37.0 33.0 37.0 5 32.17151853447399 37.0 35.0 37.0 0.0 37.0 6 33.90067060239583 37.0 35.0 37.0 17.0 37.0 7 35.526155712138326 37.0 35.0 37.0 32.0 37.0 8 35.75780289429554 37.0 35.0 37.0 35.0 37.0 9 37.67442410840573 39.0 37.0 39.0 35.0 39.0 10 37.248078512434894 39.0 37.0 39.0 34.0 39.0 11 37.24309198179925 39.0 37.0 39.0 34.0 39.0 12 37.17777712038487 39.0 37.0 39.0 34.0 39.0 13 37.133427135083764 39.0 37.0 39.0 33.0 39.0 14 38.27131016146597 40.0 38.0 41.0 33.0 41.0 15 38.43610972955883 40.0 38.0 41.0 34.0 41.0 16 38.39776133062898 40.0 38.0 41.0 34.0 41.0 17 38.387207709246624 40.0 37.0 41.0 34.0 41.0 18 38.294453062454586 40.0 37.0 41.0 34.0 41.0 19 38.160014569470306 40.0 37.0 41.0 34.0 41.0 20 38.2375526248158 40.0 37.0 41.0 34.0 41.0 21 38.13701958188579 40.0 37.0 41.0 34.0 41.0 22 38.21948500250528 40.0 37.0 41.0 34.0 41.0 23 38.226473910848895 40.0 37.0 41.0 34.0 41.0 24 38.19005393292497 40.0 37.0 41.0 34.0 41.0 25 37.91418064294259 40.0 36.0 41.0 34.0 41.0 26 37.96163126297709 40.0 36.0 41.0 34.0 41.0 27 37.943419425097574 40.0 36.0 41.0 34.0 41.0 28 37.879139957511875 40.0 36.0 41.0 33.0 41.0 29 37.84425088332036 40.0 36.0 41.0 33.0 41.0 30 37.662010475966845 40.0 36.0 41.0 33.0 41.0 31 37.6507893953485 40.0 36.0 41.0 33.0 41.0 32 37.594083094052586 40.0 36.0 41.0 33.0 41.0 33 37.49149035697051 40.0 36.0 41.0 33.0 41.0 34 37.399608399262654 40.0 35.0 41.0 33.0 41.0 35 37.3604945484666 40.0 35.0 41.0 33.0 41.0 36 37.245600962916264 40.0 35.0 41.0 33.0 41.0 37 37.19450982422341 40.0 35.0 41.0 32.0 41.0 38 37.03988669833246 39.0 35.0 41.0 32.0 41.0 39 36.93078762038765 39.0 35.0 41.0 32.0 41.0 40 36.85728390313891 39.0 35.0 41.0 31.0 41.0 41 36.76963781554089 39.0 35.0 41.0 31.0 41.0 42 36.756092645560656 39.0 35.0 41.0 31.0 41.0 43 36.6879452424578 39.0 35.0 41.0 31.0 41.0 44 36.60607332437225 39.0 35.0 41.0 31.0 41.0 45 36.548984297143235 39.0 35.0 41.0 31.0 41.0 46 36.410522559567504 39.0 35.0 41.0 31.0 41.0 47 36.330697393211146 39.0 35.0 41.0 31.0 41.0 48 36.295481060613064 38.0 35.0 41.0 31.0 41.0 49 36.26090815132281 38.0 35.0 41.0 31.0 41.0 50 36.11929216040469 38.0 35.0 40.0 30.0 41.0 51 35.0929302939594 37.0 34.0 40.0 27.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 3.0 8 12.0 9 25.0 10 31.0 11 28.0 12 12.0 13 13.0 14 33.0 15 26.0 16 44.0 17 78.0 18 153.0 19 248.0 20 435.0 21 724.0 22 1125.0 23 1634.0 24 2370.0 25 3239.0 26 4066.0 27 4956.0 28 5394.0 29 6221.0 30 7632.0 31 9840.0 32 13106.0 33 19637.0 34 33501.0 35 42551.0 36 43220.0 37 66632.0 38 106475.0 39 167283.0 40 110.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 46.005321184712415 19.205446171538874 22.39113111229031 12.398101531458408 2 35.29602094453802 23.507322637961607 23.97842683001237 17.218229587488004 3 33.78305171237499 24.5915278899968 25.29097339962319 16.334446998005017 4 28.898396433807825 26.02832171904958 25.417994035391978 19.65528781175061 5 23.204469943071828 36.71635940738495 22.09900213919761 17.980168510345617 6 25.70901365795395 35.17343771089216 24.343588046378247 14.773960584775644 7 80.7573905856816 5.66859632028429 9.250689184017217 4.323323910016881 8 81.015684367587 5.482964998141838 8.571211983944 4.930138650327167 9 75.39996708926758 6.538327136378006 11.236056850516865 6.825648923837539 10 38.51387705068068 26.12890283383593 18.798129635005186 16.559090480478204 11 30.68260187073478 25.995595878392997 24.154628672643604 19.167173578228628 12 26.287539959730577 23.766355986887476 29.851143647951307 20.09496040543064 13 25.511549263483698 24.609647281998754 31.111920526127978 18.766882928389574 14 22.178875377410296 26.950561793597938 30.372538397395243 20.49802443159652 15 20.75095635260337 25.191501635367576 33.57578805488327 20.48175395714579 16 24.866831713373404 24.52940426027582 29.698423058220563 20.905340968130208 17 24.430672063040692 23.96640886592944 28.088940329883872 23.513978741145998 18 25.797022133392005 22.94451213537035 29.359516471082003 21.898949260155643 19 24.97185023028268 25.721586297302245 26.72222047602231 22.584342996392763 20 26.233921350745206 25.634502280639797 27.367307809642842 20.764268558972148 21 25.4973125983393 27.064085331242826 27.643166308284815 19.79543576213306 22 24.21490338481336 24.10267408945433 27.467334249163827 24.215088276568483 23 22.351009601428842 27.345120799028212 27.829906980957997 22.47396261858495 24 21.958484405304915 25.80977966449542 29.30330937752493 22.928426552674736 25 22.72707943134692 26.79192466770329 27.268390720652597 23.212605180297192 26 21.683550365438553 25.563134063162725 28.23703862573656 24.516276945662163 27 22.806767777804485 24.779562804955837 28.95867114597759 23.454998271262088 28 21.05454861451363 25.777238715593953 29.16611969522443 24.00209297466798 29 22.61799329582496 25.249187862965627 27.93917800823508 24.193640832974335 30 23.621215959116736 23.9887807682992 29.64591379976593 22.74408947281814 31 23.80167031211577 24.7893620679773 27.344751015517964 24.06421660438896 32 24.45193461487972 24.536984822235823 26.835928905422318 24.175151657462138 33 23.43817312154599 23.80832641530016 27.88722342504581 24.866277038108038 34 21.83645584692442 24.20066671966897 30.05045695997278 23.91242047343383 35 23.03621844591084 24.312156448007514 30.016991552295707 22.634633553785935 36 24.258537839022146 25.67961586888956 27.985955622280933 22.07589066980736 37 22.835795783358634 25.30798344109441 28.790789432326847 23.065431343220112 38 22.66828385321813 26.720741341981334 28.041608040572648 22.569366764227883 39 24.471533140922645 23.710888460350887 28.18878187764973 23.628796521076737 40 24.300138483924584 23.30542084136842 30.49807989912306 21.896360775583933 41 21.913185925300034 24.141871141540186 28.926499980586367 25.018442952573416 42 23.571480076988927 23.944406747069927 29.196626834819554 23.287486341121593 43 24.25410043689922 23.438542905056234 28.27161338394437 24.035743274100177 44 23.225732494910854 24.136324388886525 28.292506152273152 24.34543696392947 45 23.0417651985645 23.320766857043544 28.356663591300475 25.280804353091487 46 23.633049031444543 23.942372937763587 28.495147515886828 23.929430514905047 47 21.348341613402432 24.439916650796793 30.785586578337714 23.426155157463064 48 22.169445897899077 24.34395782988849 29.125258617342475 24.361337654869956 49 24.101379847168474 23.021796889011327 29.67050440319715 23.20631886062305 50 22.00822028743272 23.73658841431284 30.12053093516401 24.13466036309043 51 22.153914990468827 23.10093056020353 27.783129366912142 26.962025082415497 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 201.0 1 534.5 2 868.0 3 1998.5 4 3129.0 5 2129.5 6 1130.0 7 1095.0 8 1060.0 9 1125.5 10 1191.0 11 1221.0 12 1251.0 13 1245.0 14 1239.0 15 1233.5 16 1228.0 17 1253.5 18 1279.0 19 1297.5 20 1316.0 21 1417.0 22 1518.0 23 1678.0 24 1838.0 25 2193.5 26 3214.5 27 3880.0 28 4625.5 29 5371.0 30 6280.5 31 7190.0 32 8108.0 33 9026.0 34 10313.0 35 11600.0 36 12592.0 37 13584.0 38 15575.5 39 17567.0 40 20160.5 41 22754.0 42 25242.0 43 27730.0 44 30889.5 45 34049.0 46 40759.0 47 47469.0 48 50296.0 49 53123.0 50 53100.0 51 53077.0 52 48315.5 53 43554.0 54 39879.5 55 36205.0 56 32565.0 57 28925.0 58 27029.5 59 25134.0 60 22622.0 61 20110.0 62 18424.0 63 16738.0 64 14986.0 65 13234.0 66 11284.0 67 9334.0 68 8441.0 69 7548.0 70 6217.0 71 4886.0 72 4286.5 73 3687.0 74 3059.0 75 1933.5 76 1436.0 77 1117.0 78 798.0 79 558.5 80 319.0 81 236.5 82 154.0 83 128.0 84 102.0 85 63.5 86 25.0 87 17.0 88 9.0 89 7.0 90 5.0 91 3.5 92 2.0 93 2.0 94 2.0 95 1.5 96 1.0 97 1.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 540857.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 36.130985877235354 #Duplication Level Percentage of deduplicated Percentage of total 1 71.91151630669464 25.982339800877636 2 9.928811271644909 7.174754796670749 3 3.8665020769332785 4.1910159580793245 4 2.1386942360163137 3.090925249489204 5 1.454110008808372 2.6269214096100932 6 1.1342410754716454 2.458874896754776 7 0.8912376741149362 2.254090707169479 8 0.852552607862732 2.464285298743083 9 0.7344875210381476 2.3883982424671424 >10 7.002156474261712 43.001403947982034 >50 0.051933786153542515 1.315744928518289 >100 0.030121595969045744 1.7165480042901593 >500 0.0015580135846058143 0.41393800803061775 >1k 0.0020773514461410857 0.9207587513174258 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1611 0.29786061750148374 No Hit GCTGTCTCTTATACACATCTGACGCCTCGTTTGTCGTATGCCGTCTTCTGC 1220 0.22556794124879587 TruSeq Adapter, Index 20 (95% over 21bp) GAATCTGTCTCTTATACACATCTGACGCCTCGTTTGTCGTATGCCGTCTTC 1070 0.19783417798050132 No Hit CCTGTCTCTTATACACATCTGACGCCTCGTTTGTCGTATGCCGTCTTCTGC 1006 0.18600110565269562 TruSeq Adapter, Index 20 (95% over 21bp) CTGTCTCTTATACACATCTGACGCCTCGTTTGTCGTATGCCGTCTTCTGCT 753 0.13922349160683878 TruSeq Adapter, Index 27 (95% over 23bp) GAATGATACGGCTGTCTCTTATACACATCTGACGCCTCGTTTGTCGTATGC 746 0.13792924932098502 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCCTCGTTTGTCGTATGCCG 707 0.13071847087122845 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.1447702442604977 0.0 2 0.0 0.0 0.0 0.6744851226849241 0.0 3 0.0 0.0 0.0 0.9438724098976254 0.0 4 0.0 0.0 0.0 1.3097731932839918 0.0 5 0.0 0.0 0.0 2.4022985742996763 0.0 6 0.0 0.0 0.0 3.2760970090060773 0.0 7 0.0 0.0 0.0 4.016958271779787 0.0 8 0.0 0.0 0.0 5.284391253140849 0.0 9 0.0 0.0 0.0 5.848680889773083 0.0 10 0.0 0.0 0.0 7.026626261655114 0.0 11 0.0 0.0 0.0 8.21437089655861 0.0 12 0.0 0.0 0.0 9.3263099118621 0.0 13 0.0 0.0 0.0 9.75747748480652 0.0 14 0.0 0.0 0.0 9.962522441236779 0.0 15 0.0 0.0 0.0 10.289226172537289 0.0 16 0.0 0.0 0.0 10.90787398517538 0.0 17 0.0 0.0 0.0 11.63671728386616 0.0 18 1.8489175512196383E-4 0.0 0.0 12.4822272800389 0.0 19 1.8489175512196383E-4 0.0 0.0 12.938355239924785 0.0 20 3.6978351024392767E-4 0.0 0.0 13.38228034397262 0.0 21 3.6978351024392767E-4 0.0 0.0 13.916247732764853 0.0 22 3.6978351024392767E-4 0.0 0.0 14.479612910621476 0.0 23 3.6978351024392767E-4 0.0 0.0 15.059248562928833 0.0 24 3.6978351024392767E-4 0.0 0.0 15.518519682651792 0.0 25 3.6978351024392767E-4 0.0 0.0 15.947838338044992 0.0 26 3.6978351024392767E-4 0.0 0.0 16.358482926170872 0.0 27 3.6978351024392767E-4 0.0 0.0 16.769312406051878 0.0 28 5.546752653658915E-4 0.0 0.0 17.15813976707337 0.0 29 5.546752653658915E-4 0.0 0.0 17.6037288969173 0.0 30 5.546752653658915E-4 0.0 0.0 18.148604899261727 0.0 31 5.546752653658915E-4 0.0 0.0 18.595488271391513 0.0 32 7.395670204878553E-4 0.0 0.0 19.041447184745692 0.0 33 7.395670204878553E-4 0.0 0.0 19.497760036386698 0.0 34 7.395670204878553E-4 0.0 0.0 19.947601676598435 0.0 35 7.395670204878553E-4 0.0 0.0 20.403174961218955 0.0 36 9.244587756098193E-4 0.0 0.0 20.825837513427764 0.0 37 9.244587756098193E-4 0.0 0.0 21.232784266451205 0.0 38 0.001109350530731783 0.0 0.0 21.68891222633709 0.0 39 0.001109350530731783 0.0 0.0 22.26041264141908 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGTTTA 20 7.02997E-4 45.000004 38 GTTTACG 20 7.02997E-4 45.000004 1 GCGATAT 20 7.02997E-4 45.000004 9 CGGTCTA 45 3.8380676E-10 45.000004 31 TAGGCCG 20 7.02997E-4 45.000004 1 GCTAACG 25 3.8880564E-5 45.000004 1 CGTTATT 125 0.0 41.399998 1 CGTAAGG 60 3.6379788E-12 41.250004 2 CGACGGT 50 1.0786607E-9 40.500004 28 CGAATGG 50 1.0786607E-9 40.500004 2 GCGATAA 45 1.9250365E-8 40.000004 9 GGCGATA 175 0.0 38.571426 8 GACCGAT 230 0.0 38.152172 9 ACGGGTA 65 9.094947E-12 38.076927 5 ACGGGAG 315 0.0 37.857143 5 GTTGATC 125 0.0 37.8 16 ATAACGC 30 1.1391227E-4 37.500004 11 GTCGGTA 30 1.1391227E-4 37.500004 10 CGTTTTT 865 0.0 37.19653 1 CCACGGG 85 0.0 37.058823 3 >>END_MODULE