SRR2936404.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936404.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	203940
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCGGCATAACTCGTATGCCGTCTTC	919	0.45062273217613025	No Hit
GCTGTCTCTTATACACATCTGACGCGGCATAACTCGTATGCCGTCTTCTGC	910	0.44620966951064034	Illumina PCR Primer Index 6 (95% over 23bp)
GAATGATACGGCTGTCTCTTATACACATCTGACGCGGCATAACTCGTATGC	704	0.3451995685005394	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGGCATAACTCGTATGCCG	675	0.33097969991173876	No Hit
CCTGTCTCTTATACACATCTGACGCGGCATAACTCGTATGCCGTCTTCTGC	536	0.26282239874472885	Illumina PCR Primer Index 6 (95% over 23bp)
CTGTCTCTTATACACATCTGACGCGGCATAACTCGTATGCCGTCTTCTGCT	491	0.24075708541727958	Illumina PCR Primer Index 6 (95% over 24bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	410	0.20103952142787093	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	370	0.1814259095812494	No Hit
GAATGCTGTCTCTTATACACATCTGACGCGGCATAACTCGTATGCCGTCTT	306	0.1500441306266549	No Hit
TCTGTCTCTTATACACATCTGACGCGGCATAACTCGTATGCCGTCTTCTGC	252	0.1235657546337158	Illumina PCR Primer Index 6 (95% over 23bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTCATGA	25	3.8794875E-5	45.0	24
AGCGTTC	20	7.0196274E-4	45.0	12
ACTGCGA	20	7.0196274E-4	45.0	28
GAATGCG	20	7.0196274E-4	45.0	1
TTAGCGG	20	7.0196274E-4	45.0	2
TAGACGG	25	3.8794875E-5	45.0	2
TCCGAAT	20	7.0196274E-4	45.0	19
TTGTCGG	25	3.8794875E-5	45.0	2
GTTAGCG	20	7.0196274E-4	45.0	1
ATTCGCG	25	3.8794875E-5	45.0	1
TTCCGCG	20	7.0196274E-4	45.0	16
TACGGGT	20	7.0196274E-4	45.0	4
TCGATGG	20	7.0196274E-4	45.0	2
ACTTACA	25	3.8794875E-5	45.0	39
ACGGGTA	25	3.8794875E-5	45.0	5
CGTTATT	20	7.0196274E-4	45.0	1
CGTTAGC	20	7.0196274E-4	45.0	42
TAGCAAG	20	7.0196274E-4	45.0	1
GCCGATA	20	7.0196274E-4	45.0	9
CTACGGG	40	6.7684596E-9	45.0	3