SRR2936402.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936402.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	191510
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCCGTCTTC	2026	1.0579082032269855	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGC	2024	1.0568638713383114	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCCG	2007	1.0479870502845803	No Hit
GCTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCCGTCTTCTGC	1446	0.7550519555114615	No Hit
CCTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCCGTCTTCTGC	854	0.44592971646389223	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	601	0.3138217325466033	No Hit
CTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCCGTCTTCTGCT	533	0.2783144483316798	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCCGTCT	472	0.2464623257271161	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTAGGATCGT	358	0.1869354080726855	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTAGGATCGTCGTA	344	0.17962508485196596	No Hit
GAACTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCCGTCTTCT	344	0.17962508485196596	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCCGTC	323	0.16865960002088665	No Hit
TCTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCCGTCTTCTGC	299	0.15612761735679598	No Hit
GGGACAGTTCAATGGTCTGAAAGTTTCAAAAAGGCTGGGGAATTTGAGGGG	239	0.12479766069656936	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCC	212	0.1106991801994674	No Hit
GAATGCTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCCGTCTT	210	0.10965484831079317	No Hit
GAATAATACGGCTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGC	209	0.10913268236645607	No Hit
ACTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCCGTCTTCTGC	197	0.10286669103441073	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACACGTG	20	7.018553E-4	45.0	42
CAAACGG	20	7.018553E-4	45.0	2
CGTATGG	25	3.878598E-5	45.0	2
CTCGTCC	25	3.878598E-5	45.0	37
GATCGGA	20	7.018553E-4	45.0	34
CCTAGTA	20	7.018553E-4	45.0	37
GGCGTAG	35	1.204844E-7	45.0	1
GGCCGAT	25	3.878598E-5	45.0	8
CCCAGTG	20	7.018553E-4	45.0	31
GCAAACG	20	7.018553E-4	45.0	1
GTGATCG	20	7.018553E-4	45.0	19
TGTATCC	20	7.018553E-4	45.0	21
TTGTAGT	20	7.018553E-4	45.0	42
TATGCGG	55	1.8189894E-12	45.0	2
GCGCAAG	25	3.878598E-5	45.0	1
ACGATGG	45	3.8198777E-10	45.0	2
GTAGCGG	25	3.878598E-5	45.0	2
TCGTCCC	25	3.878598E-5	45.0	38
GTCAAGC	20	7.018553E-4	45.0	16
ATCCAAT	20	7.018553E-4	45.0	24