SRR2936401.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936401.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	430289
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCACCGATCATCGTATGCCGTCTTC	3348	0.7780817078754046	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCACCGATCATCGTATGC	3225	0.7494962687867921	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCACCGATCATCGTATGCCG	2994	0.695811419766715	No Hit
GCTGTCTCTTATACACATCTGACGCACCGATCATCGTATGCCGTCTTCTGC	1346	0.3128130163680689	No Hit
CCTGTCTCTTATACACATCTGACGCACCGATCATCGTATGCCGTCTTCTGC	958	0.222641062169844	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	883	0.20521091638410466	No Hit
GAATGACTGTCTCTTATACACATCTGACGCACCGATCATCGTATGCCGTCT	634	0.14734283237544998	No Hit
GAATGCTGTCTCTTATACACATCTGACGCACCGATCATCGTATGCCGTCTT	619	0.1438568032183021	No Hit
GAACTGTCTCTTATACACATCTGACGCACCGATCATCGTATGCCGTCTTCT	595	0.13827915656686554	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCACCGATCATCGTATGCCGTC	511	0.11875739328683745	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCACCGATCAT	466	0.10829930581539385	No Hit
CTGTCTCTTATACACATCTGACGCACCGATCATCGTATGCCGTCTTCTGCT	433	0.10063004166966853	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATTCGT	30	2.1623237E-6	45.000004	14
CGGTCTA	30	2.1623237E-6	45.000004	31
TACCCCG	20	7.0283614E-4	45.0	35
AGGACGT	20	7.0283614E-4	45.0	38
TATTGCG	35	1.2095552E-7	45.0	1
TGCGACG	25	3.8867227E-5	45.0	1
TATTACG	20	7.0283614E-4	45.0	1
GCGATTA	25	3.8867227E-5	45.0	9
ACGCTAG	20	7.0283614E-4	45.0	1
GCGATAC	20	7.0283614E-4	45.0	9
ACTCGCG	25	3.8867227E-5	45.0	11
CTTTCGT	20	7.0283614E-4	45.0	15
GCTACGA	25	3.8867227E-5	45.0	10
CCAACGA	20	7.0283614E-4	45.0	44
CTCTACG	20	7.0283614E-4	45.0	1
ATCGAGG	20	7.0283614E-4	45.0	1
TAGTACA	20	7.0283614E-4	45.0	44
GTGCAAG	80	0.0	42.1875	1
GCGAGAC	70	0.0	41.785713	21
AGGGCCG	65	0.0	41.53846	6