SRR2936399.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936399.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	783719
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCTTAGCTCCTCGTATGCCGTCTTC	5032	0.6420668632507315	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4053	0.5171496416445179	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTTAGCTCCTCGTATGC	3152	0.40218496680570454	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTTAGCTCCTCGTATGCCG	3077	0.3926152102985892	No Hit
GCTGTCTCTTATACACATCTGACGCTTAGCTCCTCGTATGCCGTCTTCTGC	2695	0.34387325048901457	TruSeq Adapter, Index 20 (95% over 22bp)
CCTGTCTCTTATACACATCTGACGCTTAGCTCCTCGTATGCCGTCTTCTGC	1695	0.21627649706080881	TruSeq Adapter, Index 20 (95% over 22bp)
GAACTGTCTCTTATACACATCTGACGCTTAGCTCCTCGTATGCCGTCTTCT	1392	0.17761468077206244	No Hit
CTGTCTCTTATACACATCTGACGCTTAGCTCCTCGTATGCCGTCTTCTGCT	1351	0.172383213881506	TruSeq Adapter, Index 22 (95% over 22bp)
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	1299	0.1657481827032393	No Hit
CGCTGTCTCTTATACACATCTGACGCTTAGCTCCTCGTATGCCGTCTTCTG	1064	0.13576294564761093	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCTGTCTCTTATACACATCTGAC	836	0.10667088586598003	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTTAGCTCCTCGTATGCCGTCT	807	0.10297058001656205	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATATACG	20	7.0319104E-4	45.000004	1
CGAGCAT	20	7.0319104E-4	45.000004	14
CGTAAAA	20	7.0319104E-4	45.000004	14
ATCGGGT	20	7.0319104E-4	45.000004	5
CCACGCG	20	7.0319104E-4	45.000004	12
CGAAGTT	20	7.0319104E-4	45.000004	38
CGCAAAT	25	3.889666E-5	45.0	10
CGTCAAT	25	3.889666E-5	45.0	38
TAACGCC	60	3.6379788E-12	41.249996	12
ATAACGC	60	3.6379788E-12	41.249996	11
GCGATAT	50	1.0804797E-9	40.5	9
GTTCGAT	45	1.9270374E-8	40.0	39
TCGATTA	40	3.4563345E-7	39.375004	41
TTGAGCG	40	3.4563345E-7	39.375004	1
CGTTTTT	1790	0.0	38.840782	1
AACGTTG	35	6.2457457E-6	38.571426	1
ATATGCG	35	6.2457457E-6	38.571426	1
TAACGGG	140	0.0	38.571426	3
ATACCGG	35	6.2457457E-6	38.571426	2
TGGGCGA	370	0.0	38.31081	6