##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2936399.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 783719 Sequences flagged as poor quality 0 Sequence length 51 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.017201318329654 33.0 31.0 34.0 30.0 34.0 2 32.12721779107052 33.0 31.0 34.0 30.0 34.0 3 32.07121812792595 33.0 31.0 34.0 30.0 34.0 4 35.728110457957506 37.0 35.0 37.0 33.0 37.0 5 32.13012572108115 37.0 35.0 37.0 0.0 37.0 6 33.87485055230255 37.0 35.0 37.0 17.0 37.0 7 35.48330843070029 37.0 35.0 37.0 32.0 37.0 8 35.718896696392456 37.0 35.0 37.0 35.0 37.0 9 37.63536037789054 39.0 37.0 39.0 35.0 39.0 10 37.281038229263295 39.0 37.0 39.0 34.0 39.0 11 37.24290466353374 39.0 37.0 39.0 34.0 39.0 12 37.13536739571198 39.0 37.0 39.0 34.0 39.0 13 37.0386898875745 39.0 37.0 39.0 33.0 39.0 14 38.10266051990573 40.0 37.0 41.0 33.0 41.0 15 38.26488192834422 40.0 37.0 41.0 33.0 41.0 16 38.27534231019026 40.0 37.0 41.0 34.0 41.0 17 38.270496185495055 40.0 37.0 41.0 34.0 41.0 18 38.20125580724724 40.0 37.0 41.0 34.0 41.0 19 38.06265383383585 40.0 37.0 41.0 34.0 41.0 20 38.08707840437708 40.0 37.0 41.0 34.0 41.0 21 38.0336242964634 40.0 36.0 41.0 34.0 41.0 22 38.129190436878524 40.0 36.0 41.0 34.0 41.0 23 38.13065269567281 40.0 36.0 41.0 34.0 41.0 24 38.09115639661665 40.0 36.0 41.0 34.0 41.0 25 37.84676140300286 40.0 36.0 41.0 33.0 41.0 26 37.87864017587936 40.0 36.0 41.0 34.0 41.0 27 37.85759691930399 40.0 36.0 41.0 34.0 41.0 28 37.78255216474272 40.0 36.0 41.0 33.0 41.0 29 37.73707668182091 40.0 36.0 41.0 33.0 41.0 30 37.56039473331641 40.0 35.0 41.0 33.0 41.0 31 37.52161680398204 40.0 35.0 41.0 33.0 41.0 32 37.44059031362006 40.0 35.0 41.0 33.0 41.0 33 37.372218869263094 40.0 35.0 41.0 33.0 41.0 34 37.254170180893915 40.0 35.0 41.0 32.0 41.0 35 37.22288600888839 40.0 35.0 41.0 32.0 41.0 36 37.10380123488138 40.0 35.0 41.0 32.0 41.0 37 37.04460527306343 40.0 35.0 41.0 32.0 41.0 38 36.900771832761485 39.0 35.0 41.0 31.0 41.0 39 36.795473887962395 39.0 35.0 41.0 31.0 41.0 40 36.715514106459075 39.0 35.0 41.0 31.0 41.0 41 36.570487636512574 39.0 35.0 41.0 31.0 41.0 42 36.573213103165806 39.0 35.0 41.0 31.0 41.0 43 36.49665377514135 39.0 35.0 41.0 31.0 41.0 44 36.45100348466734 39.0 35.0 41.0 31.0 41.0 45 36.42484742618209 39.0 35.0 41.0 31.0 41.0 46 36.27594711880151 39.0 35.0 41.0 31.0 41.0 47 36.17104344797051 38.0 35.0 41.0 30.0 41.0 48 36.14229207152053 38.0 35.0 40.0 30.0 41.0 49 36.115704736008695 38.0 35.0 40.0 30.0 41.0 50 35.99199840759252 38.0 35.0 40.0 30.0 41.0 51 34.90763526212839 37.0 34.0 40.0 27.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 3.0 8 16.0 9 27.0 10 25.0 11 33.0 12 15.0 13 18.0 14 31.0 15 31.0 16 47.0 17 115.0 18 214.0 19 343.0 20 682.0 21 1155.0 22 1912.0 23 2709.0 24 3674.0 25 4931.0 26 6243.0 27 7246.0 28 7979.0 29 9423.0 30 11475.0 31 14976.0 32 20530.0 33 30755.0 34 53061.0 35 62248.0 36 63152.0 37 95361.0 38 149991.0 39 235155.0 40 143.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 45.51069962575872 19.495380359542132 22.115834884697193 12.878085130001951 2 34.620699510921646 24.75083543974307 23.301336320798654 17.327128728536632 3 31.91105485512027 25.445216971899363 26.09379126957494 16.54993690340543 4 28.632073485522234 24.42533612174772 27.792359251211213 19.150231141518837 5 23.407879609911205 36.15032939101898 22.40701067602036 18.03478032304946 6 25.05757803498448 34.712951963650234 25.365724194513597 14.863745806851691 7 78.0564207324309 5.404998475218797 11.784836146629086 4.753744645721234 8 78.15339426503633 6.000875313728518 10.308031322451033 5.53769909878413 9 72.47750788228944 6.191632460103685 12.559603633445152 8.77125602416172 10 40.709999374775904 23.274030615565017 19.86821807305935 16.147751936599725 11 31.308160195171997 23.55333990881936 25.501614736914636 19.63688515909401 12 27.22136377961999 19.923212273786906 31.395181181010027 21.460242765583075 13 26.13845013327481 21.57712139172331 33.75827305450041 18.526155420501482 14 21.940134155226552 25.51348123498346 32.205292968525704 20.34109164126428 15 19.86387978344279 23.317668705237462 35.61837852597679 21.20007298534296 16 23.5838355328887 23.44871057100823 30.5622295746307 22.405224321472364 17 23.679277904453 22.915611335185186 29.113623632960284 24.29148712740153 18 24.71817067086545 22.1787400841373 30.702968793662016 22.400120451335237 19 24.057985068627914 25.1888750942621 27.415183248077433 23.33795658903255 20 23.5689067127376 27.01172231373745 27.908599893584306 21.510771079940643 21 23.725850719454293 26.658406903494747 29.758497624786433 19.857244752264524 22 22.247897524495386 22.57352443924417 29.97860202445009 25.199976011810353 23 21.435488995418 25.66034509817932 29.246579450032474 23.657586456370204 24 22.617034932163186 25.14370584354852 28.586904234808653 23.652354989479647 25 23.10394414324522 25.97142598303729 27.288352075169797 23.636277798547695 26 21.0125057578035 23.927581186624288 29.36754117228241 25.6923718832898 27 22.38417085715671 23.597105595245235 29.74561035269019 24.273113194907868 28 20.630608674792878 24.8405359574031 29.78810007158178 24.740755296222243 29 22.89340950008868 24.08605635438212 29.612016551850857 23.408517593678347 30 23.119383350410033 23.642912829725958 30.809512082774564 22.428191737089442 31 23.63232229919142 24.884046450322117 27.960659368983016 23.522971881503445 32 25.75604266325048 24.11948670378031 27.38239088244639 22.74207975052283 33 24.217736203920026 22.120300771067182 27.33390411614367 26.328058908869124 34 21.61910072360119 23.439268411254545 30.604974487029153 24.336656378115116 35 22.103713193121514 22.97647498657044 29.237902870799353 25.681908949508685 36 22.36362777985477 24.378508113239565 28.04589400027306 25.21197010663261 37 21.806412757633794 24.52983786280542 29.172190542783827 24.491558836776957 38 21.93643384937714 25.07863149930013 26.536807197477668 26.448127453845068 39 23.173229180356735 21.977137213720734 27.542397211245355 27.307236394677176 40 23.047035991216237 20.925739965472317 30.45173078616188 25.575493257149567 41 20.145868608519123 22.340787960991122 28.937795306736213 28.575548123753542 42 21.25060129970053 22.76836468172904 30.04112443362991 25.93990958494052 43 22.004060128694086 22.101416451559807 29.396505635310614 26.49801778443549 44 22.169935908150755 22.672539519904454 29.16134481874243 25.99617975320236 45 21.976244036446737 21.547901735188248 28.764263722073856 27.711590506291156 46 23.506129110050924 22.476678503392158 28.48150931647695 25.53568307007997 47 20.056168090859096 23.33272512214199 31.467400943450397 25.14370584354852 48 20.799929566592105 23.597871175765803 29.191074862291206 26.411124395350882 49 22.61894888346461 21.694893195137542 30.885559747817776 24.80059817358007 50 21.609020580080358 21.62701172231374 30.268119057978687 26.495848639627212 51 20.931737012883445 21.726026802974026 28.519915939258844 28.822320244883688 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 352.0 1 780.0 2 1208.0 3 3927.0 4 6646.0 5 4287.5 6 1929.0 7 1868.5 8 1808.0 9 1831.0 10 1854.0 11 1824.5 12 1795.0 13 1783.0 14 1771.0 15 1768.0 16 1765.0 17 1716.0 18 1667.0 19 1682.0 20 1697.0 21 1978.0 22 2259.0 23 2369.0 24 2479.0 25 3011.5 26 4256.5 27 4969.0 28 6030.5 29 7092.0 30 8264.0 31 9436.0 32 10649.0 33 11862.0 34 13156.5 35 14451.0 36 16744.5 37 19038.0 38 20523.5 39 22009.0 40 24575.0 41 27141.0 42 31462.5 43 35784.0 44 41219.5 45 46655.0 46 62212.5 47 77770.0 48 79614.5 49 81459.0 50 81632.0 51 81805.0 52 71914.0 53 62023.0 54 54513.5 55 47004.0 56 44466.0 57 41928.0 58 39980.5 59 38033.0 60 33780.5 61 29528.0 62 26442.5 63 23357.0 64 21693.0 65 20029.0 66 17780.5 67 15532.0 68 13642.5 69 11753.0 70 10230.0 71 8707.0 72 7436.0 73 6165.0 74 4906.5 75 3176.5 76 2705.0 77 2174.5 78 1644.0 79 1179.0 80 714.0 81 529.0 82 344.0 83 278.0 84 212.0 85 153.5 86 95.0 87 63.0 88 31.0 89 21.5 90 12.0 91 7.5 92 3.0 93 3.0 94 3.0 95 3.5 96 4.0 97 2.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 783719.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 34.563006741951185 #Duplication Level Percentage of deduplicated Percentage of total 1 71.79035366801236 24.81290477834571 2 10.649105269795777 7.361301944713987 3 4.137263317466534 4.289887798044694 4 2.2532172387868905 3.1151185046108774 5 1.4014230417290636 2.4218697019803677 6 0.9865794706165897 2.045949173663509 7 0.791501054897154 1.9149659407670265 8 0.6597575649303892 1.8242564131793866 9 0.5894276896193817 1.8335153889186662 >10 6.626244753321163 42.287475246529915 >50 0.07139365003427997 1.6822171996328417 >100 0.03625750629636665 2.3712013863973915 >500 0.0037378872470480748 0.8340675684091473 >1k 0.0033640985223432674 2.555171680296796 >5k 3.737887247048075E-4 0.6500972745097319 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GAATCTGTCTCTTATACACATCTGACGCTTAGCTCCTCGTATGCCGTCTTC 5032 0.6420668632507315 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4053 0.5171496416445179 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCTTAGCTCCTCGTATGC 3152 0.40218496680570454 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCTTAGCTCCTCGTATGCCG 3077 0.3926152102985892 No Hit GCTGTCTCTTATACACATCTGACGCTTAGCTCCTCGTATGCCGTCTTCTGC 2695 0.34387325048901457 TruSeq Adapter, Index 20 (95% over 22bp) CCTGTCTCTTATACACATCTGACGCTTAGCTCCTCGTATGCCGTCTTCTGC 1695 0.21627649706080881 TruSeq Adapter, Index 20 (95% over 22bp) GAACTGTCTCTTATACACATCTGACGCTTAGCTCCTCGTATGCCGTCTTCT 1392 0.17761468077206244 No Hit CTGTCTCTTATACACATCTGACGCTTAGCTCCTCGTATGCCGTCTTCTGCT 1351 0.172383213881506 TruSeq Adapter, Index 22 (95% over 22bp) GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG 1299 0.1657481827032393 No Hit CGCTGTCTCTTATACACATCTGACGCTTAGCTCCTCGTATGCCGTCTTCTG 1064 0.13576294564761093 No Hit GGGGTTGGGGATTTAGCTCAGTGGTAGAGCTGTCTCTTATACACATCTGAC 836 0.10667088586598003 No Hit GAATGACTGTCTCTTATACACATCTGACGCTTAGCTCCTCGTATGCCGTCT 807 0.10297058001656205 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.2759675342820579E-4 0.0 0.0 0.18016661584062654 0.0 2 1.2759675342820579E-4 0.0 0.0 0.8968775798468583 0.0 3 1.2759675342820579E-4 0.0 0.0 1.296638208337427 0.0 4 1.2759675342820579E-4 0.0 0.0 1.9145892851902275 0.0 5 1.2759675342820579E-4 0.0 0.0 3.7283771351721726 0.0 6 1.2759675342820579E-4 0.0 0.0 4.9566234836720815 0.0 7 1.2759675342820579E-4 0.0 0.0 6.044258209894108 0.0 8 1.2759675342820579E-4 0.0 0.0 7.669968445322877 0.0 9 1.2759675342820579E-4 0.0 0.0 8.440014852262099 0.0 10 1.2759675342820579E-4 0.0 0.0 10.163974587830587 0.0 11 1.2759675342820579E-4 0.0 0.0 11.695901209489625 0.0 12 1.2759675342820579E-4 0.0 0.0 13.35108629496031 0.0 13 1.2759675342820579E-4 0.0 0.0 13.952960180881158 0.0 14 1.2759675342820579E-4 0.0 0.0 14.28343577226021 0.0 15 1.2759675342820579E-4 0.0 0.0 14.718413104696964 0.0 16 1.2759675342820579E-4 0.0 0.0 15.418026103743816 0.0 17 1.2759675342820579E-4 0.0 0.0 16.176716399627928 0.0 18 1.2759675342820579E-4 0.0 0.0 17.050243773597426 0.0 19 2.5519350685641157E-4 0.0 0.0 17.615497391284375 0.0 20 2.5519350685641157E-4 0.0 0.0 18.169777688176502 0.0 21 2.5519350685641157E-4 0.0 0.0 18.752512061083117 0.0 22 2.5519350685641157E-4 0.0 0.0 19.41091130877266 0.0 23 2.5519350685641157E-4 0.0 0.0 20.043918802529987 0.0 24 3.827902602846173E-4 0.0 0.0 20.572424555229617 0.0 25 3.827902602846173E-4 0.0 0.0 21.033431625365726 0.0 26 3.827902602846173E-4 0.0 0.0 21.48104103639187 0.0 27 3.827902602846173E-4 0.0 0.0 21.99653192024182 0.0 28 3.827902602846173E-4 0.0 0.0 22.457666587131357 0.0 29 3.827902602846173E-4 0.0 0.0 22.968563987857895 0.0 30 3.827902602846173E-4 0.0 0.0 23.670346131713025 0.0 31 3.827902602846173E-4 0.0 0.0 24.17996756490528 0.0 32 3.827902602846173E-4 0.0 0.0 24.718425864372307 0.0 33 3.827902602846173E-4 0.0 0.0 25.23672387679768 0.0 34 5.103870137128231E-4 0.0 0.0 25.788197045114384 0.0 35 5.103870137128231E-4 0.0 0.0 26.344901680321644 0.0 36 5.103870137128231E-4 0.0 0.0 26.863454886253873 0.0 37 5.103870137128231E-4 0.0 0.0 27.38647397855609 0.0 38 5.103870137128231E-4 0.0 0.0 27.93692637284537 0.0 39 6.379837671410288E-4 0.0 0.0 28.74346545126506 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATATACG 20 7.0319104E-4 45.000004 1 CGAGCAT 20 7.0319104E-4 45.000004 14 CGTAAAA 20 7.0319104E-4 45.000004 14 ATCGGGT 20 7.0319104E-4 45.000004 5 CCACGCG 20 7.0319104E-4 45.000004 12 CGAAGTT 20 7.0319104E-4 45.000004 38 CGCAAAT 25 3.889666E-5 45.0 10 CGTCAAT 25 3.889666E-5 45.0 38 TAACGCC 60 3.6379788E-12 41.249996 12 ATAACGC 60 3.6379788E-12 41.249996 11 GCGATAT 50 1.0804797E-9 40.5 9 GTTCGAT 45 1.9270374E-8 40.0 39 TCGATTA 40 3.4563345E-7 39.375004 41 TTGAGCG 40 3.4563345E-7 39.375004 1 CGTTTTT 1790 0.0 38.840782 1 AACGTTG 35 6.2457457E-6 38.571426 1 ATATGCG 35 6.2457457E-6 38.571426 1 TAACGGG 140 0.0 38.571426 3 ATACCGG 35 6.2457457E-6 38.571426 2 TGGGCGA 370 0.0 38.31081 6 >>END_MODULE