SRR2936396.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936396.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	310748
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3670	1.1810212776912483	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	664	0.2136779641381441	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCGGTTACACTCGTATGCCGTCTT	338	0.10876980704622395	No Hit
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	334	0.10748259039478934	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGAC	50	2.1827873E-11	45.0	25
CGGTTTA	25	3.8842147E-5	45.0	1
GCTTACG	20	7.025334E-4	45.0	1
GCGATCG	25	3.8842147E-5	45.0	9
TATAGCG	25	3.8842147E-5	45.0	1
CGGTCTA	40	6.7866495E-9	45.0	31
CGCACGG	20	7.025334E-4	45.0	2
CGTTTTA	230	0.0	44.02174	1
CGTTTTT	1655	0.0	43.640484	1
TAGGGCG	75	0.0	42.0	5
TTCCGCC	65	0.0	41.538464	34
CGCCCAA	65	0.0	41.538464	37
ATTTCCG	60	3.6379788E-12	41.250004	32
TCTCACG	55	6.002665E-11	40.90909	23
CGACGGT	50	1.0768417E-9	40.5	28
GACGGTC	50	1.0768417E-9	40.5	29
GGCGATC	90	0.0	40.0	8
AGGCGAT	125	0.0	39.600002	7
CGTTTCT	40	3.447367E-7	39.375	1
TCCGCCC	70	0.0	38.571426	35