SRR2936395.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936395.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	129434
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCAGCGATACTCGTATGCCG	793	0.6126674598637144	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGCGATACTCGTATGCCGTCTTC	673	0.5199561166308698	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGCGATACTCGTATGC	644	0.497550875349599	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	282	0.21787165659718466	No Hit
GCTGTCTCTTATACACATCTGACGCAGCGATACTCGTATGCCGTCTTCTGC	261	0.20164717153143685	TruSeq Adapter, Index 23 (95% over 21bp)
GAATGAAACCTGTCTCTTATACACATCTGACGCAGCGATACTCGTATGCCG	202	0.156064094441955	No Hit
GAATGACTGTCTCTTATACACATCTGACGCAGCGATACTCGTATGCCGTCT	175	0.13520404221456495	No Hit
GAATGAAACGGCTGTCTCTTATACACATCTGACGCAGCGATACTCGTATGC	162	0.12516031336434014	No Hit
GAATCTATCTCTTATACACATCTGACGCAGCGATACTCGTATGCCGTCTTC	147	0.11357139546023455	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGGCGAT	45	3.783498E-10	45.000004	7
CTAGATG	20	7.0100784E-4	45.0	1
CTCACGT	25	3.87158E-5	45.0	45
GGACTAC	20	7.0100784E-4	45.0	8
GGATCGC	20	7.0100784E-4	45.0	8
CACGACG	25	3.87158E-5	45.0	26
TACGGCT	100	0.0	45.0	7
CATAGGA	20	7.0100784E-4	45.0	4
CTGTTAT	20	7.0100784E-4	45.0	23
CTACCCA	20	7.0100784E-4	45.0	16
CGATGGC	20	7.0100784E-4	45.0	11
CGGTCTA	25	3.87158E-5	45.0	31
GGCGATA	40	6.7338988E-9	45.0	8
GGACAAC	40	6.7338988E-9	45.0	8
CCCGGGA	20	7.0100784E-4	45.0	4
TCGACAC	25	3.87158E-5	45.0	34
CGTTTGG	20	7.0100784E-4	45.0	2
GACCGAT	115	0.0	41.08696	9
GGACTCC	40	3.4266122E-7	39.375	8
GGATGAC	70	0.0	38.571426	8