SRR2936393.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936393.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	60684
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	228	0.37571682815898755	No Hit
CCTGTCTCTTATACACATCTGACGCTGTGTAGGTCGTATGCCGTCTTCTGC	188	0.3098015951486388	Illumina Single End Adapter 2 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCTGTGTAGGTCGTATGCCGTCTTCTGC	166	0.27354821699294707	Illumina Single End Adapter 2 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCTGTGTAGGTCGTATGCCGTCTTCTGCT	133	0.2191681497594094	Illumina Single End Adapter 2 (95% over 22bp)
GAATGATACCTGTCTCTTATACACATCTGACGCTGTGTAGGTCGTATGCCG	96	0.15819655922483686	No Hit
TCTGTCTCTTATACACATCTGACGCTGTGTAGGTCGTATGCCGTCTTCTGC	81	0.1334783468459561	Illumina Single End Adapter 2 (95% over 21bp)
GAATCTGTCTCTTATACACATCTGACGCTGTGTAGGTCGTATGCCGTCTTC	75	0.12359106189440379	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGTGTAGGTCGTATGC	66	0.10876013446707535	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAGGATT	25	3.8471233E-5	45.000004	6
GGCCTTT	25	3.8471233E-5	45.000004	8
TAGATGG	25	3.8471233E-5	45.000004	2
GAGTGAC	20	6.9805066E-4	45.0	9
TACGGCG	20	6.9805066E-4	45.0	15
AGGCGAT	20	6.9805066E-4	45.0	7
GGATAGC	20	6.9805066E-4	45.0	8
CTGGCAC	20	6.9805066E-4	45.0	26
CGGGAGC	20	6.9805066E-4	45.0	6
AGGGGTA	45	1.8770152E-8	40.0	6
AGGGGTT	40	3.3865763E-7	39.375	6
AGGGAGC	40	3.3865763E-7	39.375	6
ATCTCTT	35	6.150989E-6	38.57143	7
ATTGGGA	70	0.0	38.57143	4
GAACGGG	35	6.150989E-6	38.57143	3
TATCTCT	35	6.150989E-6	38.57143	6
AACGGGA	35	6.150989E-6	38.57143	4
GTATGGG	65	9.094947E-12	38.076927	3
TACGGGA	30	1.1272224E-4	37.500004	4
CTAGGAT	30	1.1272224E-4	37.500004	5